miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 5' -63.7 NC_006151.1 + 46009 1.05 0.000985
Target:  5'- gAGACGCCCGUGGAGGGGGCGACGGAUg -3'
miRNA:   3'- -UCUGCGGGCACCUCCCCCGCUGCCUA- -5'
29486 5' -63.7 NC_006151.1 + 49143 0.66 0.559631
Target:  5'- -cGCGCCCGcccacggcugccUGGAGGccuGGGCGcgccGCGGGg -3'
miRNA:   3'- ucUGCGGGC------------ACCUCC---CCCGC----UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 49755 0.68 0.431822
Target:  5'- gGGACGUggaagaCGgcgaGGAGGGgaaGGCGACGGAg -3'
miRNA:   3'- -UCUGCGg-----GCa---CCUCCC---CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 52374 0.72 0.252404
Target:  5'- -cGCGCCCccgGGGcccgcGGGGGCGGCGGGc -3'
miRNA:   3'- ucUGCGGGca-CCU-----CCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 54623 0.66 0.540532
Target:  5'- cGGGCGCgCCccGGGGGGaagcGGCGGCGcGAg -3'
miRNA:   3'- -UCUGCG-GGcaCCUCCC----CCGCUGC-CUa -5'
29486 5' -63.7 NC_006151.1 + 63490 0.72 0.261792
Target:  5'- cGGCGCCCGaagaagguggccaGGuGGGGGCGcGCGGGg -3'
miRNA:   3'- uCUGCGGGCa------------CCuCCCCCGC-UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 64488 0.77 0.122832
Target:  5'- gGGACGCCCGcGGGcGcGGGCGGCGGGc -3'
miRNA:   3'- -UCUGCGGGCaCCUcC-CCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 65121 0.66 0.540532
Target:  5'- aGGACGCCCGUcGGcGGGcuccgcgccaGCGACGuGAUc -3'
miRNA:   3'- -UCUGCGGGCA-CCuCCCc---------CGCUGC-CUA- -5'
29486 5' -63.7 NC_006151.1 + 66904 0.66 0.537685
Target:  5'- aGGACGCCgccgaggagggccaCGaUGGAggcGGGGGCGAgGGc- -3'
miRNA:   3'- -UCUGCGG--------------GC-ACCU---CCCCCGCUgCCua -5'
29486 5' -63.7 NC_006151.1 + 72560 0.69 0.390413
Target:  5'- cGGcCGCgCG-GGAGGGuGGgGGCGGGUg -3'
miRNA:   3'- -UCuGCGgGCaCCUCCC-CCgCUGCCUA- -5'
29486 5' -63.7 NC_006151.1 + 78561 0.74 0.177373
Target:  5'- aAGcACGCCCG-GGAGGacgcGGCGACGGGc -3'
miRNA:   3'- -UC-UGCGGGCaCCUCCc---CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 78634 0.66 0.534844
Target:  5'- cGGACGCCgacgCGUGcGAGcugguggaggcggccGGGGCG-CGGGUg -3'
miRNA:   3'- -UCUGCGG----GCAC-CUC---------------CCCCGCuGCCUA- -5'
29486 5' -63.7 NC_006151.1 + 78721 0.66 0.540532
Target:  5'- cGGCGCCCGUGGGGcGcGCGcuGCGGc- -3'
miRNA:   3'- uCUGCGGGCACCUCcCcCGC--UGCCua -5'
29486 5' -63.7 NC_006151.1 + 88815 0.66 0.559631
Target:  5'- -cGCGUCCGguggGcGAGGGaGGCGuugGCGGAg -3'
miRNA:   3'- ucUGCGGGCa---C-CUCCC-CCGC---UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 89156 0.66 0.559631
Target:  5'- -cGCGCCCGccucggGcGAGGcGGGCG-CGGGg -3'
miRNA:   3'- ucUGCGGGCa-----C-CUCC-CCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 90669 0.73 0.206622
Target:  5'- gGGGCGgcgggccgcuuguccCCCGcGGcGGGGGCGGCGGAc -3'
miRNA:   3'- -UCUGC---------------GGGCaCCuCCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 90745 0.71 0.270238
Target:  5'- cGGCGCCCuc---GGGGGCGGCGGGc -3'
miRNA:   3'- uCUGCGGGcaccuCCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 91685 0.66 0.559631
Target:  5'- uGGUGCgCGUGGGuGGGGUGGCGGu- -3'
miRNA:   3'- uCUGCGgGCACCUcCCCCGCUGCCua -5'
29486 5' -63.7 NC_006151.1 + 96702 0.69 0.398486
Target:  5'- -uGCGUCCGcgccGGGGGcGGCGGCGGAc -3'
miRNA:   3'- ucUGCGGGCa---CCUCCcCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 102677 0.71 0.295574
Target:  5'- uGACG-CCGUGGAcgcGGGGGCGcccggcGCGGGc -3'
miRNA:   3'- uCUGCgGGCACCU---CCCCCGC------UGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.