miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 5' -63.7 NC_006151.1 + 27630 0.69 0.398486
Target:  5'- cGGcCGCCCcgacgGGuGGGGGUGGCuGGAUg -3'
miRNA:   3'- -UCuGCGGGca---CCuCCCCCGCUG-CCUA- -5'
29486 5' -63.7 NC_006151.1 + 27945 0.66 0.559631
Target:  5'- cGAuCGCgCGggguggggagGGAGGGGG-GACGGGg -3'
miRNA:   3'- uCU-GCGgGCa---------CCUCCCCCgCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 28222 0.66 0.569252
Target:  5'- --uCGcCCCGUcGAGGGGGCcgggccGACGGGc -3'
miRNA:   3'- ucuGC-GGGCAcCUCCCCCG------CUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 29182 0.74 0.190596
Target:  5'- cGGACGCCCGcucucgaGGAaaaaGGGGcGCGGCGGGg -3'
miRNA:   3'- -UCUGCGGGCa------CCU----CCCC-CGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 29418 0.7 0.344276
Target:  5'- gAGAagGCUCGgugUGGccgcGGGGGGCGGCGGGg -3'
miRNA:   3'- -UCUg-CGGGC---ACC----UCCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 30957 0.69 0.382448
Target:  5'- cGGCgGCCCG-GGAGaGcGGGCGGgGGAc -3'
miRNA:   3'- uCUG-CGGGCaCCUC-C-CCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 31651 0.7 0.308921
Target:  5'- cGGGCGCgCGgggagGGAGGaGGGCGGaGGAa -3'
miRNA:   3'- -UCUGCGgGCa----CCUCC-CCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 31739 0.67 0.484725
Target:  5'- gAGGCGCCCGcgccGGGGacgcgccugcGGCGGCGGGc -3'
miRNA:   3'- -UCUGCGGGCacc-UCCC----------CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 32578 0.67 0.512316
Target:  5'- -cGCGgCCGggcGGAGGGGGaaGCGGGa -3'
miRNA:   3'- ucUGCgGGCa--CCUCCCCCgcUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 33066 0.67 0.503044
Target:  5'- gGGugGCauGagacGGAGGGGGCGaggGCGGGc -3'
miRNA:   3'- -UCugCGggCa---CCUCCCCCGC---UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 33226 0.71 0.282681
Target:  5'- gGGGCGcCCCGgcgggcgGGAGGGGGUccGGgGGAa -3'
miRNA:   3'- -UCUGC-GGGCa------CCUCCCCCG--CUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 33308 0.68 0.443869
Target:  5'- -cGCGCgCGUGGgaccgggaccgggacAGGGGGCGgggGCGGGg -3'
miRNA:   3'- ucUGCGgGCACC---------------UCCCCCGC---UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 40049 0.66 0.573112
Target:  5'- gGGGCG-CCGUGGAgacccaccggcccgcGGGGGCcuCGGGc -3'
miRNA:   3'- -UCUGCgGGCACCU---------------CCCCCGcuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 40573 0.72 0.252404
Target:  5'- cGGCGgCCGcggcGGAGGGcucGGCGGCGGAg -3'
miRNA:   3'- uCUGCgGGCa---CCUCCC---CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 40798 0.67 0.512316
Target:  5'- aGGugGuCuuGUGGAuGGGGGUcccugGugGGAg -3'
miRNA:   3'- -UCugC-GggCACCU-CCCCCG-----CugCCUa -5'
29486 5' -63.7 NC_006151.1 + 40845 0.67 0.466732
Target:  5'- uGGAgGgUCuUGGuGGGGGUGACGGGg -3'
miRNA:   3'- -UCUgCgGGcACCuCCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 41173 0.66 0.531064
Target:  5'- uGGugGUCCugcgGUGGucgaGGGGGGUGGgGGGg -3'
miRNA:   3'- -UCugCGGG----CACC----UCCCCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 42255 0.7 0.336978
Target:  5'- cGGCcCCCGgGGAGcGGGGgGugGGAUc -3'
miRNA:   3'- uCUGcGGGCaCCUC-CCCCgCugCCUA- -5'
29486 5' -63.7 NC_006151.1 + 45313 0.67 0.503044
Target:  5'- cGAgGCCgGgaggcugGGAGGGuGGCGGUGGAg -3'
miRNA:   3'- uCUgCGGgCa------CCUCCC-CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 45584 0.69 0.366845
Target:  5'- gGGACgGCCC---GAGGGGGCGGgGGGa -3'
miRNA:   3'- -UCUG-CGGGcacCUCCCCCGCUgCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.