miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 5' -63.7 NC_006151.1 + 5256 0.7 0.351687
Target:  5'- cGGGgGCCCG-GGGGGcggaGGGCGAgCGGGc -3'
miRNA:   3'- -UCUgCGGGCaCCUCC----CCCGCU-GCCUa -5'
29486 5' -63.7 NC_006151.1 + 6400 0.73 0.219652
Target:  5'- cGGGCGCCgagCGcGGAGaGcGGGCGGCGGAg -3'
miRNA:   3'- -UCUGCGG---GCaCCUC-C-CCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 8130 0.69 0.35921
Target:  5'- cGGAcccCGCCCgGUGG-GGGGGCGggugcaaagggGCGGGg -3'
miRNA:   3'- -UCU---GCGGG-CACCuCCCCCGC-----------UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 9045 0.66 0.521657
Target:  5'- gGGGCGCCCcgcGUGcuccGGGGGCGcCGGc- -3'
miRNA:   3'- -UCUGCGGG---CACcu--CCCCCGCuGCCua -5'
29486 5' -63.7 NC_006151.1 + 10222 0.67 0.474787
Target:  5'- gAGGCGgCUGcGGAcgcggagGGGGGCGAgGGGa -3'
miRNA:   3'- -UCUGCgGGCaCCU-------CCCCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 11806 0.66 0.531064
Target:  5'- gGGGCGgg-GUGGgguGGGGGGCGGCGGc- -3'
miRNA:   3'- -UCUGCgggCACC---UCCCCCGCUGCCua -5'
29486 5' -63.7 NC_006151.1 + 13089 0.69 0.366845
Target:  5'- cGGGCGUCCGggaagGGAGaGGucGCGGCGGGUc -3'
miRNA:   3'- -UCUGCGGGCa----CCUC-CCc-CGCUGCCUA- -5'
29486 5' -63.7 NC_006151.1 + 17098 0.66 0.521657
Target:  5'- -cGCGCCCGUcGGGgcgccGGGGGCuccGGCGGc- -3'
miRNA:   3'- ucUGCGGGCA-CCU-----CCCCCG---CUGCCua -5'
29486 5' -63.7 NC_006151.1 + 18108 0.74 0.181688
Target:  5'- gAGACGCUCGUcgGGAcGGGGGCGcUGGGg -3'
miRNA:   3'- -UCUGCGGGCA--CCU-CCCCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 20112 0.69 0.399299
Target:  5'- cGGGCGCCCcggcgacggggcugGGGGGcGGGCGccGCGGGg -3'
miRNA:   3'- -UCUGCGGGca------------CCUCC-CCCGC--UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 20303 0.66 0.550056
Target:  5'- cGGGCGCCCGccgUGGcGuuGGCGGCGGc- -3'
miRNA:   3'- -UCUGCGGGC---ACCuCccCCGCUGCCua -5'
29486 5' -63.7 NC_006151.1 + 20466 0.7 0.336978
Target:  5'- uGGCGCCgGUcccccGGGGGGGCG-CGGGg -3'
miRNA:   3'- uCUGCGGgCAc----CUCCCCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 21324 0.71 0.302191
Target:  5'- gAGACGCCCGgcgcGGcGGGGGuccGCGGCuGGAa -3'
miRNA:   3'- -UCUGCGGGCa---CC-UCCCC---CGCUG-CCUa -5'
29486 5' -63.7 NC_006151.1 + 22196 0.67 0.512316
Target:  5'- uAGACGUCCGcGGGGccgacgaaGGGCGAgGGGa -3'
miRNA:   3'- -UCUGCGGGCaCCUCc-------CCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 23001 0.66 0.540532
Target:  5'- cGGcCGCgCG-GGuGGGGGCG-CGGGg -3'
miRNA:   3'- -UCuGCGgGCaCCuCCCCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 23410 0.72 0.246679
Target:  5'- -aGCGCUgGUGGucgccggccguGGGGGCGAUGGGUg -3'
miRNA:   3'- ucUGCGGgCACCu----------CCCCCGCUGCCUA- -5'
29486 5' -63.7 NC_006151.1 + 26289 0.69 0.390413
Target:  5'- cGGACGgUgggGUGGGGGGGGUGGgGGGa -3'
miRNA:   3'- -UCUGCgGg--CACCUCCCCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 26336 0.66 0.521657
Target:  5'- cGAgGCCCGccucacGGGGcGGCGGCGGGc -3'
miRNA:   3'- uCUgCGGGCacc---UCCC-CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 27290 0.72 0.246679
Target:  5'- -aGCGCCCGcGcuuGGGGGGCGugGGGg -3'
miRNA:   3'- ucUGCGGGCaCc--UCCCCCGCugCCUa -5'
29486 5' -63.7 NC_006151.1 + 27449 0.66 0.521657
Target:  5'- cGGACG-CgGUGGGucGGGGGCgGGCGGu- -3'
miRNA:   3'- -UCUGCgGgCACCU--CCCCCG-CUGCCua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.