miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 5' -63.7 NC_006151.1 + 142340 0.7 0.344276
Target:  5'- cGGCGCCCGcuuUGGaAGGGGGaaaGGgGGGa -3'
miRNA:   3'- uCUGCGGGC---ACC-UCCCCCg--CUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 136641 0.71 0.269627
Target:  5'- cGGCGCCCGUGGGgcgcucgccccucGGGGaGCGcGCGGc- -3'
miRNA:   3'- uCUGCGGGCACCU-------------CCCC-CGC-UGCCua -5'
29486 5' -63.7 NC_006151.1 + 135076 0.68 0.431822
Target:  5'- --cCGCCUccucgGGcGGGGGCGGCGGGg -3'
miRNA:   3'- ucuGCGGGca---CCuCCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 134996 0.67 0.503044
Target:  5'- cGGGCGCgUCuUGGcGGGGGCG-CGGGg -3'
miRNA:   3'- -UCUGCG-GGcACCuCCCCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 130920 0.75 0.169016
Target:  5'- cGGugGCCgGgcccgcggGGGcGGGGGCGGCGGGg -3'
miRNA:   3'- -UCugCGGgCa-------CCU-CCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 130694 0.66 0.569252
Target:  5'- aGGAUGUCCG-GGGGcccgacGGGGCGGCccGGGg -3'
miRNA:   3'- -UCUGCGGGCaCCUC------CCCCGCUG--CCUa -5'
29486 5' -63.7 NC_006151.1 + 127911 0.68 0.406665
Target:  5'- cGGGgGCCCcucggGGAgcGGGGGCGGCGaGAc -3'
miRNA:   3'- -UCUgCGGGca---CCU--CCCCCGCUGC-CUa -5'
29486 5' -63.7 NC_006151.1 + 127359 0.68 0.431822
Target:  5'- cGGucuCGCCC-UGGGcggggaccgcGGGGGUGGCGGGg -3'
miRNA:   3'- -UCu--GCGGGcACCU----------CCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 122939 0.68 0.423335
Target:  5'- cGGACGCCgacggcggcgcCGcGGGGGGcgcggacgccGGCGACGGGg -3'
miRNA:   3'- -UCUGCGG-----------GCaCCUCCC----------CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 122691 0.69 0.380868
Target:  5'- cGGCGgCCGUGGAGcucgcgcucuucGGGCGGCGGc- -3'
miRNA:   3'- uCUGCgGGCACCUCc-----------CCCGCUGCCua -5'
29486 5' -63.7 NC_006151.1 + 120060 0.7 0.329793
Target:  5'- cGGGCaGCCCGUGGAGGGGcGCaACu--- -3'
miRNA:   3'- -UCUG-CGGGCACCUCCCC-CGcUGccua -5'
29486 5' -63.7 NC_006151.1 + 118401 0.67 0.49293
Target:  5'- cGGACGCCgGUGGAcaacgccgaGGagacgacGGGCG-CGGAg -3'
miRNA:   3'- -UCUGCGGgCACCU---------CC-------CCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 118225 0.67 0.457865
Target:  5'- cGGGCGCCCGgaccaccGGGcucGGCGGCGGGc -3'
miRNA:   3'- -UCUGCGGGCaccu---CCC---CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 111840 0.66 0.531064
Target:  5'- aAGACGCaCCGcgucGGGGGGCGcuCGGGg -3'
miRNA:   3'- -UCUGCG-GGCacc-UCCCCCGCu-GCCUa -5'
29486 5' -63.7 NC_006151.1 + 110029 0.66 0.550056
Target:  5'- uGGgGCCUGgaggacgaGGAGGGGGacgagGACGGGg -3'
miRNA:   3'- uCUgCGGGCa-------CCUCCCCCg----CUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 108400 0.68 0.449089
Target:  5'- cGGACGUCCGcgacgccaaauuUGGuGGGaaGGUGGCGGGa -3'
miRNA:   3'- -UCUGCGGGC------------ACCuCCC--CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 104000 0.7 0.308921
Target:  5'- uGGCGgCCGUGGAGGcgcgccGcGCGGCGGAg -3'
miRNA:   3'- uCUGCgGGCACCUCCc-----C-CGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 102987 0.66 0.540532
Target:  5'- uGGCGCagCUGcUGGAGGcGGGCGA-GGAc -3'
miRNA:   3'- uCUGCG--GGC-ACCUCC-CCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 102677 0.71 0.295574
Target:  5'- uGACG-CCGUGGAcgcGGGGGCGcccggcGCGGGc -3'
miRNA:   3'- uCUGCgGGCACCU---CCCCCGC------UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 96702 0.69 0.398486
Target:  5'- -uGCGUCCGcgccGGGGGcGGCGGCGGAc -3'
miRNA:   3'- ucUGCGGGCa---CCUCCcCCGCUGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.