miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 5' -63.7 NC_006151.1 + 46009 1.05 0.000985
Target:  5'- gAGACGCCCGUGGAGGGGGCGACGGAUg -3'
miRNA:   3'- -UCUGCGGGCACCUCCCCCGCUGCCUA- -5'
29486 5' -63.7 NC_006151.1 + 64488 0.77 0.122832
Target:  5'- gGGACGCCCGcGGGcGcGGGCGGCGGGc -3'
miRNA:   3'- -UCUGCGGGCaCCUcC-CCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 130920 0.75 0.169016
Target:  5'- cGGugGCCgGgcccgcggGGGcGGGGGCGGCGGGg -3'
miRNA:   3'- -UCugCGGgCa-------CCU-CCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 78561 0.74 0.177373
Target:  5'- aAGcACGCCCG-GGAGGacgcGGCGACGGGc -3'
miRNA:   3'- -UC-UGCGGGCaCCUCCc---CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 18108 0.74 0.181688
Target:  5'- gAGACGCUCGUcgGGAcGGGGGCGcUGGGg -3'
miRNA:   3'- -UCUGCGGGCA--CCU-CCCCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 29182 0.74 0.190596
Target:  5'- cGGACGCCCGcucucgaGGAaaaaGGGGcGCGGCGGGg -3'
miRNA:   3'- -UCUGCGGGCa------CCU----CCCC-CGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 90669 0.73 0.206622
Target:  5'- gGGGCGgcgggccgcuuguccCCCGcGGcGGGGGCGGCGGAc -3'
miRNA:   3'- -UCUGC---------------GGGCaCCuCCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 6400 0.73 0.219652
Target:  5'- cGGGCGCCgagCGcGGAGaGcGGGCGGCGGAg -3'
miRNA:   3'- -UCUGCGG---GCaCCUC-C-CCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 27290 0.72 0.246679
Target:  5'- -aGCGCCCGcGcuuGGGGGGCGugGGGg -3'
miRNA:   3'- ucUGCGGGCaCc--UCCCCCGCugCCUa -5'
29486 5' -63.7 NC_006151.1 + 23410 0.72 0.246679
Target:  5'- -aGCGCUgGUGGucgccggccguGGGGGCGAUGGGUg -3'
miRNA:   3'- ucUGCGGgCACCu----------CCCCCGCUGCCUA- -5'
29486 5' -63.7 NC_006151.1 + 52374 0.72 0.252404
Target:  5'- -cGCGCCCccgGGGcccgcGGGGGCGGCGGGc -3'
miRNA:   3'- ucUGCGGGca-CCU-----CCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 40573 0.72 0.252404
Target:  5'- cGGCGgCCGcggcGGAGGGcucGGCGGCGGAg -3'
miRNA:   3'- uCUGCgGGCa---CCUCCC---CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 63490 0.72 0.261792
Target:  5'- cGGCGCCCGaagaagguggccaGGuGGGGGCGcGCGGGg -3'
miRNA:   3'- uCUGCGGGCa------------CCuCCCCCGC-UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 136641 0.71 0.269627
Target:  5'- cGGCGCCCGUGGGgcgcucgccccucGGGGaGCGcGCGGc- -3'
miRNA:   3'- uCUGCGGGCACCU-------------CCCC-CGC-UGCCua -5'
29486 5' -63.7 NC_006151.1 + 90745 0.71 0.270238
Target:  5'- cGGCGCCCuc---GGGGGCGGCGGGc -3'
miRNA:   3'- uCUGCGGGcaccuCCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 33226 0.71 0.282681
Target:  5'- gGGGCGcCCCGgcgggcgGGAGGGGGUccGGgGGAa -3'
miRNA:   3'- -UCUGC-GGGCa------CCUCCCCCG--CUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 102677 0.71 0.295574
Target:  5'- uGACG-CCGUGGAcgcGGGGGCGcccggcGCGGGc -3'
miRNA:   3'- uCUGCgGGCACCU---CCCCCGC------UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 21324 0.71 0.302191
Target:  5'- gAGACGCCCGgcgcGGcGGGGGuccGCGGCuGGAa -3'
miRNA:   3'- -UCUGCGGGCa---CC-UCCCC---CGCUG-CCUa -5'
29486 5' -63.7 NC_006151.1 + 104000 0.7 0.308921
Target:  5'- uGGCGgCCGUGGAGGcgcgccGcGCGGCGGAg -3'
miRNA:   3'- uCUGCgGGCACCUCCc-----C-CGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 31651 0.7 0.308921
Target:  5'- cGGGCGCgCGgggagGGAGGaGGGCGGaGGAa -3'
miRNA:   3'- -UCUGCGgGCa----CCUCC-CCCGCUgCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.