Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29486 | 5' | -63.7 | NC_006151.1 | + | 120060 | 0.7 | 0.329793 |
Target: 5'- cGGGCaGCCCGUGGAGGGGcGCaACu--- -3' miRNA: 3'- -UCUG-CGGGCACCUCCCC-CGcUGccua -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 42255 | 0.7 | 0.336978 |
Target: 5'- cGGCcCCCGgGGAGcGGGGgGugGGAUc -3' miRNA: 3'- uCUGcGGGCaCCUC-CCCCgCugCCUA- -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 20466 | 0.7 | 0.336978 |
Target: 5'- uGGCGCCgGUcccccGGGGGGGCG-CGGGg -3' miRNA: 3'- uCUGCGGgCAc----CUCCCCCGCuGCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 142340 | 0.7 | 0.344276 |
Target: 5'- cGGCGCCCGcuuUGGaAGGGGGaaaGGgGGGa -3' miRNA: 3'- uCUGCGGGC---ACC-UCCCCCg--CUgCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 29418 | 0.7 | 0.344276 |
Target: 5'- gAGAagGCUCGgugUGGccgcGGGGGGCGGCGGGg -3' miRNA: 3'- -UCUg-CGGGC---ACC----UCCCCCGCUGCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 5256 | 0.7 | 0.351687 |
Target: 5'- cGGGgGCCCG-GGGGGcggaGGGCGAgCGGGc -3' miRNA: 3'- -UCUgCGGGCaCCUCC----CCCGCU-GCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 8130 | 0.69 | 0.35921 |
Target: 5'- cGGAcccCGCCCgGUGG-GGGGGCGggugcaaagggGCGGGg -3' miRNA: 3'- -UCU---GCGGG-CACCuCCCCCGC-----------UGCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 13089 | 0.69 | 0.366845 |
Target: 5'- cGGGCGUCCGggaagGGAGaGGucGCGGCGGGUc -3' miRNA: 3'- -UCUGCGGGCa----CCUC-CCc-CGCUGCCUA- -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 45584 | 0.69 | 0.366845 |
Target: 5'- gGGACgGCCC---GAGGGGGCGGgGGGa -3' miRNA: 3'- -UCUG-CGGGcacCUCCCCCGCUgCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 122691 | 0.69 | 0.380868 |
Target: 5'- cGGCGgCCGUGGAGcucgcgcucuucGGGCGGCGGc- -3' miRNA: 3'- uCUGCgGGCACCUCc-----------CCCGCUGCCua -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 30957 | 0.69 | 0.382448 |
Target: 5'- cGGCgGCCCG-GGAGaGcGGGCGGgGGAc -3' miRNA: 3'- uCUG-CGGGCaCCUC-C-CCCGCUgCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 26289 | 0.69 | 0.390413 |
Target: 5'- cGGACGgUgggGUGGGGGGGGUGGgGGGa -3' miRNA: 3'- -UCUGCgGg--CACCUCCCCCGCUgCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 72560 | 0.69 | 0.390413 |
Target: 5'- cGGcCGCgCG-GGAGGGuGGgGGCGGGUg -3' miRNA: 3'- -UCuGCGgGCaCCUCCC-CCgCUGCCUA- -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 96702 | 0.69 | 0.398486 |
Target: 5'- -uGCGUCCGcgccGGGGGcGGCGGCGGAc -3' miRNA: 3'- ucUGCGGGCa---CCUCCcCCGCUGCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 27630 | 0.69 | 0.398486 |
Target: 5'- cGGcCGCCCcgacgGGuGGGGGUGGCuGGAUg -3' miRNA: 3'- -UCuGCGGGca---CCuCCCCCGCUG-CCUA- -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 20112 | 0.69 | 0.399299 |
Target: 5'- cGGGCGCCCcggcgacggggcugGGGGGcGGGCGccGCGGGg -3' miRNA: 3'- -UCUGCGGGca------------CCUCC-CCCGC--UGCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 127911 | 0.68 | 0.406665 |
Target: 5'- cGGGgGCCCcucggGGAgcGGGGGCGGCGaGAc -3' miRNA: 3'- -UCUgCGGGca---CCU--CCCCCGCUGC-CUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 122939 | 0.68 | 0.423335 |
Target: 5'- cGGACGCCgacggcggcgcCGcGGGGGGcgcggacgccGGCGACGGGg -3' miRNA: 3'- -UCUGCGG-----------GCaCCUCCC----------CCGCUGCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 135076 | 0.68 | 0.431822 |
Target: 5'- --cCGCCUccucgGGcGGGGGCGGCGGGg -3' miRNA: 3'- ucuGCGGGca---CCuCCCCCGCUGCCUa -5' |
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29486 | 5' | -63.7 | NC_006151.1 | + | 127359 | 0.68 | 0.431822 |
Target: 5'- cGGucuCGCCC-UGGGcggggaccgcGGGGGUGGCGGGg -3' miRNA: 3'- -UCu--GCGGGcACCU----------CCCCCGCUGCCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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