miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 5' -63.7 NC_006151.1 + 27945 0.66 0.559631
Target:  5'- cGAuCGCgCGggguggggagGGAGGGGG-GACGGGg -3'
miRNA:   3'- uCU-GCGgGCa---------CCUCCCCCgCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 110029 0.66 0.550056
Target:  5'- uGGgGCCUGgaggacgaGGAGGGGGacgagGACGGGg -3'
miRNA:   3'- uCUgCGGGCa-------CCUCCCCCg----CUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 20303 0.66 0.550056
Target:  5'- cGGGCGCCCGccgUGGcGuuGGCGGCGGc- -3'
miRNA:   3'- -UCUGCGGGC---ACCuCccCCGCUGCCua -5'
29486 5' -63.7 NC_006151.1 + 78721 0.66 0.540532
Target:  5'- cGGCGCCCGUGGGGcGcGCGcuGCGGc- -3'
miRNA:   3'- uCUGCGGGCACCUCcCcCGC--UGCCua -5'
29486 5' -63.7 NC_006151.1 + 31739 0.67 0.484725
Target:  5'- gAGGCGCCCGcgccGGGGacgcgccugcGGCGGCGGGc -3'
miRNA:   3'- -UCUGCGGGCacc-UCCC----------CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 10222 0.67 0.474787
Target:  5'- gAGGCGgCUGcGGAcgcggagGGGGGCGAgGGGa -3'
miRNA:   3'- -UCUGCgGGCaCCU-------CCCCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 40845 0.67 0.466732
Target:  5'- uGGAgGgUCuUGGuGGGGGUGACGGGg -3'
miRNA:   3'- -UCUgCgGGcACCuCCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 118225 0.67 0.457865
Target:  5'- cGGGCGCCCGgaccaccGGGcucGGCGGCGGGc -3'
miRNA:   3'- -UCUGCGGGCaccu---CCC---CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 118401 0.67 0.49293
Target:  5'- cGGACGCCgGUGGAcaacgccgaGGagacgacGGGCG-CGGAg -3'
miRNA:   3'- -UCUGCGGgCACCU---------CC-------CCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 33066 0.67 0.503044
Target:  5'- gGGugGCauGagacGGAGGGGGCGaggGCGGGc -3'
miRNA:   3'- -UCugCGggCa---CCUCCCCCGC---UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 134996 0.67 0.503044
Target:  5'- cGGGCGCgUCuUGGcGGGGGCG-CGGGg -3'
miRNA:   3'- -UCUGCG-GGcACCuCCCCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 45313 0.67 0.503044
Target:  5'- cGAgGCCgGgaggcugGGAGGGuGGCGGUGGAg -3'
miRNA:   3'- uCUgCGGgCa------CCUCCC-CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 22196 0.67 0.512316
Target:  5'- uAGACGUCCGcGGGGccgacgaaGGGCGAgGGGa -3'
miRNA:   3'- -UCUGCGGGCaCCUCc-------CCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 32578 0.67 0.512316
Target:  5'- -cGCGgCCGggcGGAGGGGGaaGCGGGa -3'
miRNA:   3'- ucUGCgGGCa--CCUCCCCCgcUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 40798 0.67 0.512316
Target:  5'- aGGugGuCuuGUGGAuGGGGGUcccugGugGGAg -3'
miRNA:   3'- -UCugC-GggCACCU-CCCCCG-----CugCCUa -5'
29486 5' -63.7 NC_006151.1 + 49755 0.68 0.431822
Target:  5'- gGGACGUggaagaCGgcgaGGAGGGgaaGGCGACGGAg -3'
miRNA:   3'- -UCUGCGg-----GCa---CCUCCC---CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 127359 0.68 0.431822
Target:  5'- cGGucuCGCCC-UGGGcggggaccgcGGGGGUGGCGGGg -3'
miRNA:   3'- -UCu--GCGGGcACCU----------CCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 135076 0.68 0.431822
Target:  5'- --cCGCCUccucgGGcGGGGGCGGCGGGg -3'
miRNA:   3'- ucuGCGGGca---CCuCCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 33308 0.68 0.443869
Target:  5'- -cGCGCgCGUGGgaccgggaccgggacAGGGGGCGgggGCGGGg -3'
miRNA:   3'- ucUGCGgGCACC---------------UCCCCCGC---UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 122939 0.68 0.423335
Target:  5'- cGGACGCCgacggcggcgcCGcGGGGGGcgcggacgccGGCGACGGGg -3'
miRNA:   3'- -UCUGCGG-----------GCaCCUCCC----------CCGCUGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.