Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29487 | 3' | -59.3 | NC_006151.1 | + | 130552 | 0.67 | 0.656375 |
Target: 5'- cGAGG-GCGGcGCGCUGCCGccccacgagUGCAucuggagguggUGCAg -3' miRNA: 3'- -CUCCgCGUC-UGCGACGGC---------ACGU-----------ACGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 86578 | 0.67 | 0.656375 |
Target: 5'- -cGGCGCGGGCGCgcuccgagcUGCUG-GCGcGCGc -3' miRNA: 3'- cuCCGCGUCUGCG---------ACGGCaCGUaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 100448 | 0.67 | 0.656375 |
Target: 5'- -uGGCGCAGacgacggagGCGCUGCgcgaGUGCGagGCGc -3' miRNA: 3'- cuCCGCGUC---------UGCGACGg---CACGUa-CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 88178 | 0.67 | 0.656375 |
Target: 5'- cGAGGUgGUAGACGgUGUCGgcgGCGUGg- -3' miRNA: 3'- -CUCCG-CGUCUGCgACGGCa--CGUACgu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 21501 | 0.67 | 0.646164 |
Target: 5'- gGGGGCGCGGGCGUcaCCGggGCggGCu -3' miRNA: 3'- -CUCCGCGUCUGCGacGGCa-CGuaCGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 27170 | 0.67 | 0.646164 |
Target: 5'- cGAGGCGCcgcgugucgGGGCGCcaggggGCCGcGCAgaagGCGc -3' miRNA: 3'- -CUCCGCG---------UCUGCGa-----CGGCaCGUa---CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 89827 | 0.67 | 0.646164 |
Target: 5'- aAGaGCGC-GAUGCUGCCGgcguagGCGUGgGu -3' miRNA: 3'- cUC-CGCGuCUGCGACGGCa-----CGUACgU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 31738 | 0.67 | 0.635941 |
Target: 5'- aGAGGCGCccgcgccggGGACGC-GCC-UGCGgcgGCGg -3' miRNA: 3'- -CUCCGCG---------UCUGCGaCGGcACGUa--CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 76955 | 0.67 | 0.635941 |
Target: 5'- -cGGCGCAGACG--GCCGcGCGcGCGu -3' miRNA: 3'- cuCCGCGUCUGCgaCGGCaCGUaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 65804 | 0.67 | 0.635941 |
Target: 5'- -cGGCGCGGACGUgccGCgGUGgAUGg- -3' miRNA: 3'- cuCCGCGUCUGCGa--CGgCACgUACgu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 99558 | 0.67 | 0.625716 |
Target: 5'- uGGGCGCGGcgcgcgcgGCGCUGCUGcGCGaggugGCGg -3' miRNA: 3'- cUCCGCGUC--------UGCGACGGCaCGUa----CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 90698 | 0.67 | 0.625716 |
Target: 5'- gGGGGCgGCGGACGCgcccGCCccGCAgGCGg -3' miRNA: 3'- -CUCCG-CGUCUGCGa---CGGcaCGUaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 52392 | 0.67 | 0.624693 |
Target: 5'- gGGGGCgGCGGGCGCcGCCGcGCccgagaagucaaaGUGCu -3' miRNA: 3'- -CUCCG-CGUCUGCGaCGGCaCG-------------UACGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 7163 | 0.68 | 0.615495 |
Target: 5'- cGGGCGCgAGGCGCaUGCuCG-GCAcGCGa -3' miRNA: 3'- cUCCGCG-UCUGCG-ACG-GCaCGUaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 58665 | 0.68 | 0.615495 |
Target: 5'- -cGGCGCAGGgccgccaugacCGC-GCCGUGCGcGCc -3' miRNA: 3'- cuCCGCGUCU-----------GCGaCGGCACGUaCGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 130282 | 0.68 | 0.605287 |
Target: 5'- cGAGGcCGCGGGCGCgcGCCG-GCcgacgGCGc -3' miRNA: 3'- -CUCC-GCGUCUGCGa-CGGCaCGua---CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 86728 | 0.68 | 0.605287 |
Target: 5'- -cGGCGCGccGcCGCgagGCCG-GCGUGCGc -3' miRNA: 3'- cuCCGCGU--CuGCGa--CGGCaCGUACGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 102743 | 0.68 | 0.605287 |
Target: 5'- gGAGcGCGCGGccaaGCUGCCGcGCAaGCu -3' miRNA: 3'- -CUC-CGCGUCug--CGACGGCaCGUaCGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 118097 | 0.68 | 0.599172 |
Target: 5'- cGAGGCGCuGcgccgcgaccugcugGCGCUGCuCGUGgCGcGCAg -3' miRNA: 3'- -CUCCGCGuC---------------UGCGACG-GCAC-GUaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 30590 | 0.68 | 0.595099 |
Target: 5'- cGGGCGCAGggaucguagcaaACGCgggcgGUCG-GCGUGCGc -3' miRNA: 3'- cUCCGCGUC------------UGCGa----CGGCaCGUACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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