miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 52392 0.67 0.624693
Target:  5'- gGGGGCgGCGGGCGCcGCCGcGCccgagaagucaaaGUGCu -3'
miRNA:   3'- -CUCCG-CGUCUGCGaCGGCaCG-------------UACGu -5'
29487 3' -59.3 NC_006151.1 + 53083 0.66 0.716935
Target:  5'- cGAGGCGCAGGUGCUcGuCCGUcaGCGggagGCc -3'
miRNA:   3'- -CUCCGCGUCUGCGA-C-GGCA--CGUa---CGu -5'
29487 3' -59.3 NC_006151.1 + 53257 0.69 0.544699
Target:  5'- -uGGCGCGcacgcGGCacaGCUGCCGcGCGUGCu -3'
miRNA:   3'- cuCCGCGU-----CUG---CGACGGCaCGUACGu -5'
29487 3' -59.3 NC_006151.1 + 53344 0.67 0.656375
Target:  5'- cGGGGCGCGcGCGC-GCCGcGUAcUGCGu -3'
miRNA:   3'- -CUCCGCGUcUGCGaCGGCaCGU-ACGU- -5'
29487 3' -59.3 NC_006151.1 + 54911 0.66 0.715941
Target:  5'- -cGGCGCAG-CGCgugcacggcgaggUGCUG-GCGUGCc -3'
miRNA:   3'- cuCCGCGUCuGCG-------------ACGGCaCGUACGu -5'
29487 3' -59.3 NC_006151.1 + 58396 0.69 0.505399
Target:  5'- -cGGCGCAGccggccauggcGCGCaGCUGgGCGUGCGg -3'
miRNA:   3'- cuCCGCGUC-----------UGCGaCGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 58665 0.68 0.615495
Target:  5'- -cGGCGCAGGgccgccaugacCGC-GCCGUGCGcGCc -3'
miRNA:   3'- cuCCGCGUCU-----------GCGaCGGCACGUaCGu -5'
29487 3' -59.3 NC_006151.1 + 62503 0.67 0.666567
Target:  5'- aAGGCGCGGACGacgGCcCGgcgGUAccUGCAg -3'
miRNA:   3'- cUCCGCGUCUGCga-CG-GCa--CGU--ACGU- -5'
29487 3' -59.3 NC_006151.1 + 65804 0.67 0.635941
Target:  5'- -cGGCGCGGACGUgccGCgGUGgAUGg- -3'
miRNA:   3'- cuCCGCGUCUGCGa--CGgCACgUACgu -5'
29487 3' -59.3 NC_006151.1 + 66293 0.67 0.656375
Target:  5'- cGAGGCGCAcgcGGCGCUcCCG-GCGguccgagGCGa -3'
miRNA:   3'- -CUCCGCGU---CUGCGAcGGCaCGUa------CGU- -5'
29487 3' -59.3 NC_006151.1 + 69140 0.66 0.736639
Target:  5'- aGGGcGCGCGGGUGCUcgacGCCGUGCcgcucGCAc -3'
miRNA:   3'- -CUC-CGCGUCUGCGA----CGGCACGua---CGU- -5'
29487 3' -59.3 NC_006151.1 + 69808 0.74 0.282784
Target:  5'- cAGGCGCuccAGGCGCUcGCCGUccacguuguagcGCGUGCGg -3'
miRNA:   3'- cUCCGCG---UCUGCGA-CGGCA------------CGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 69968 0.68 0.574811
Target:  5'- cGGGGCcgcGCGGGCGCUGCa--GCGgcgGCAg -3'
miRNA:   3'- -CUCCG---CGUCUGCGACGgcaCGUa--CGU- -5'
29487 3' -59.3 NC_006151.1 + 71091 0.68 0.581896
Target:  5'- -cGGCGCcgcGGGCGCgggcGCCGUGCGcuaccccuucuuccUGCu -3'
miRNA:   3'- cuCCGCG---UCUGCGa---CGGCACGU--------------ACGu -5'
29487 3' -59.3 NC_006151.1 + 72034 0.66 0.736639
Target:  5'- --cGCGCGGGCGCcccGCCGcGCA-GCGu -3'
miRNA:   3'- cucCGCGUCUGCGa--CGGCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 72869 0.66 0.736639
Target:  5'- cGAGGCgGCGG-CGC--CCGUGUcgGCGa -3'
miRNA:   3'- -CUCCG-CGUCuGCGacGGCACGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 73261 0.66 0.685848
Target:  5'- cGGGCGcCAGGCgGUUGCCG-GCguugaccGUGCGg -3'
miRNA:   3'- cUCCGC-GUCUG-CGACGGCaCG-------UACGU- -5'
29487 3' -59.3 NC_006151.1 + 73934 0.71 0.422002
Target:  5'- -uGGUGCAGcgaGCcGUCGUGCGUGCGc -3'
miRNA:   3'- cuCCGCGUCug-CGaCGGCACGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 74607 0.67 0.676731
Target:  5'- uGAGGCGCcgcaGGGCG-UGCaCGUGCuccaGCAg -3'
miRNA:   3'- -CUCCGCG----UCUGCgACG-GCACGua--CGU- -5'
29487 3' -59.3 NC_006151.1 + 75093 0.71 0.413251
Target:  5'- cAGGCGCAGgucgGCGUUGCCGgGCGccaGCAg -3'
miRNA:   3'- cUCCGCGUC----UGCGACGGCaCGUa--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.