miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 2679 0.66 0.726827
Target:  5'- aGAGGCGCAG-CgGCUcgGCCccgggGUGCAgGCGg -3'
miRNA:   3'- -CUCCGCGUCuG-CGA--CGG-----CACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 4223 0.68 0.574811
Target:  5'- cGGGGCGCgggcGGGCGCgggcaGCCGgagcggGCAggGCAg -3'
miRNA:   3'- -CUCCGCG----UCUGCGa----CGGCa-----CGUa-CGU- -5'
29487 3' -59.3 NC_006151.1 + 5668 0.66 0.715941
Target:  5'- gGAGGCuggggaaGCGGGCcCccGCCGUGCcgGCGc -3'
miRNA:   3'- -CUCCG-------CGUCUGcGa-CGGCACGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 7163 0.68 0.615495
Target:  5'- cGGGCGCgAGGCGCaUGCuCG-GCAcGCGa -3'
miRNA:   3'- cUCCGCG-UCUGCG-ACG-GCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 20978 0.66 0.703967
Target:  5'- uGGGCGCgucgccgggcacgaGGacgGCGCUGCCGgcgaCGUGCAc -3'
miRNA:   3'- cUCCGCG--------------UC---UGCGACGGCac--GUACGU- -5'
29487 3' -59.3 NC_006151.1 + 21501 0.67 0.646164
Target:  5'- gGGGGCGCGGGCGUcaCCGggGCggGCu -3'
miRNA:   3'- -CUCCGCGUCUGCGacGGCa-CGuaCGu -5'
29487 3' -59.3 NC_006151.1 + 21675 0.66 0.726827
Target:  5'- -cGGUGCGGGgGCUGCUG-GUAgaacgGCGu -3'
miRNA:   3'- cuCCGCGUCUgCGACGGCaCGUa----CGU- -5'
29487 3' -59.3 NC_006151.1 + 27170 0.67 0.646164
Target:  5'- cGAGGCGCcgcgugucgGGGCGCcaggggGCCGcGCAgaagGCGc -3'
miRNA:   3'- -CUCCGCG---------UCUGCGa-----CGGCaCGUa---CGU- -5'
29487 3' -59.3 NC_006151.1 + 27440 0.66 0.716935
Target:  5'- uGGGCGCggcGGACGCgguggGUCGgggGCggGCGg -3'
miRNA:   3'- cUCCGCG---UCUGCGa----CGGCa--CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 30590 0.68 0.595099
Target:  5'- cGGGCGCAGggaucguagcaaACGCgggcgGUCG-GCGUGCGc -3'
miRNA:   3'- cUCCGCGUC------------UGCGa----CGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 31738 0.67 0.635941
Target:  5'- aGAGGCGCccgcgccggGGACGC-GCC-UGCGgcgGCGg -3'
miRNA:   3'- -CUCCGCG---------UCUGCGaCGGcACGUa--CGU- -5'
29487 3' -59.3 NC_006151.1 + 33046 0.71 0.430864
Target:  5'- gGAGGgGgGGAUGCUGCCGcgggugGCAUGa- -3'
miRNA:   3'- -CUCCgCgUCUGCGACGGCa-----CGUACgu -5'
29487 3' -59.3 NC_006151.1 + 35079 0.68 0.564725
Target:  5'- cGGGgGUGGGuCGCgUGCCGaGCAUGCGc -3'
miRNA:   3'- cUCCgCGUCU-GCG-ACGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 35163 0.69 0.505399
Target:  5'- -uGGcCGCAGA-GCggGCCGgGCAUGCAa -3'
miRNA:   3'- cuCC-GCGUCUgCGa-CGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 43381 0.66 0.726827
Target:  5'- cGGGgGCGGugGUgGCCGUcgcucgugGCcgGCAa -3'
miRNA:   3'- cUCCgCGUCugCGaCGGCA--------CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 44397 0.71 0.430864
Target:  5'- gGGGGCGCcgaggagggagGGGCGCgugUGCaUGUGCAUGUAa -3'
miRNA:   3'- -CUCCGCG-----------UCUGCG---ACG-GCACGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 45868 1.08 0.001279
Target:  5'- cGAGGCGCAGACGCUGCCGUGCAUGCAc -3'
miRNA:   3'- -CUCCGCGUCUGCGACGGCACGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 46361 0.66 0.726827
Target:  5'- -cGGCGCAGugGaUGCgGcGgAUGCAg -3'
miRNA:   3'- cuCCGCGUCugCgACGgCaCgUACGU- -5'
29487 3' -59.3 NC_006151.1 + 49182 0.7 0.463644
Target:  5'- cGGGGUGCugcugcugaacacGACGCUGaCCGUGCG-GCGc -3'
miRNA:   3'- -CUCCGCGu------------CUGCGAC-GGCACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 51981 0.74 0.303219
Target:  5'- cGAGGCgaGCAGcuccGCGgUGCCG-GCGUGCAg -3'
miRNA:   3'- -CUCCG--CGUC----UGCgACGGCaCGUACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.