miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 45868 1.08 0.001279
Target:  5'- cGAGGCGCAGACGCUGCCGUGCAUGCAc -3'
miRNA:   3'- -CUCCGCGUCUGCGACGGCACGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 82425 0.78 0.169232
Target:  5'- aGAGGCGCGGGCGCUcGCgCGgGCGcUGCAc -3'
miRNA:   3'- -CUCCGCGUCUGCGA-CG-GCaCGU-ACGU- -5'
29487 3' -59.3 NC_006151.1 + 102335 0.76 0.206719
Target:  5'- gGAGGCGCGcGCGCUGCUGgacgugGCcgGCGa -3'
miRNA:   3'- -CUCCGCGUcUGCGACGGCa-----CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 85897 0.74 0.269776
Target:  5'- -cGGCGCAcGACGCcgugGCCGUGCA-GUAc -3'
miRNA:   3'- cuCCGCGU-CUGCGa---CGGCACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 69808 0.74 0.282784
Target:  5'- cAGGCGCuccAGGCGCUcGCCGUccacguuguagcGCGUGCGg -3'
miRNA:   3'- cUCCGCG---UCUGCGA-CGGCA------------CGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 51981 0.74 0.303219
Target:  5'- cGAGGCgaGCAGcuccGCGgUGCCG-GCGUGCAg -3'
miRNA:   3'- -CUCCG--CGUC----UGCgACGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 133653 0.73 0.324771
Target:  5'- cGGGUGCgagAGGCGCUGCCG-GCGcgGCGg -3'
miRNA:   3'- cUCCGCG---UCUGCGACGGCaCGUa-CGU- -5'
29487 3' -59.3 NC_006151.1 + 121861 0.72 0.363173
Target:  5'- gGAGGCGCAGACGaC-GCCGcucaCGUGCGc -3'
miRNA:   3'- -CUCCGCGUCUGC-GaCGGCac--GUACGU- -5'
29487 3' -59.3 NC_006151.1 + 96602 0.72 0.396088
Target:  5'- cGGGCGCGGGCGCgccgacGUCGUGCccgaggGCGc -3'
miRNA:   3'- cUCCGCGUCUGCGa-----CGGCACGua----CGU- -5'
29487 3' -59.3 NC_006151.1 + 121162 0.71 0.404612
Target:  5'- -uGGUGCAGAcggccguguaCGCgGCCGUGC-UGCAc -3'
miRNA:   3'- cuCCGCGUCU----------GCGaCGGCACGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 119993 0.71 0.413251
Target:  5'- -uGGCGCGGcgcACGCUGCUggcgGUGC-UGCAg -3'
miRNA:   3'- cuCCGCGUC---UGCGACGG----CACGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 75093 0.71 0.413251
Target:  5'- cAGGCGCAGgucgGCGUUGCCGgGCGccaGCAg -3'
miRNA:   3'- cUCCGCGUC----UGCGACGGCaCGUa--CGU- -5'
29487 3' -59.3 NC_006151.1 + 73934 0.71 0.422002
Target:  5'- -uGGUGCAGcgaGCcGUCGUGCGUGCGc -3'
miRNA:   3'- cuCCGCGUCug-CGaCGGCACGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 105284 0.71 0.430864
Target:  5'- uGGGCGCGcGCGCgGCCGcGCcgGCGc -3'
miRNA:   3'- cUCCGCGUcUGCGaCGGCaCGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 44397 0.71 0.430864
Target:  5'- gGGGGCGCcgaggagggagGGGCGCgugUGCaUGUGCAUGUAa -3'
miRNA:   3'- -CUCCGCG-----------UCUGCG---ACG-GCACGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 118963 0.71 0.430864
Target:  5'- gGAGGCGCucguCGCcGCCG-GCGUGUAc -3'
miRNA:   3'- -CUCCGCGucu-GCGaCGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 33046 0.71 0.430864
Target:  5'- gGAGGgGgGGAUGCUGCCGcgggugGCAUGa- -3'
miRNA:   3'- -CUCCgCgUCUGCGACGGCa-----CGUACgu -5'
29487 3' -59.3 NC_006151.1 + 98791 0.71 0.430864
Target:  5'- -uGGCGCAGcacacaacuggGCGCUGCCGcugGCGUugGCGg -3'
miRNA:   3'- cuCCGCGUC-----------UGCGACGGCa--CGUA--CGU- -5'
29487 3' -59.3 NC_006151.1 + 76703 0.7 0.458089
Target:  5'- -uGGCGCGGGCGCgccgcgGCCGccuuuuaaUGCAUGa- -3'
miRNA:   3'- cuCCGCGUCUGCGa-----CGGC--------ACGUACgu -5'
29487 3' -59.3 NC_006151.1 + 49182 0.7 0.463644
Target:  5'- cGGGGUGCugcugcugaacacGACGCUGaCCGUGCG-GCGc -3'
miRNA:   3'- -CUCCGCGu------------CUGCGAC-GGCACGUaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.