miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 5' -57.5 NC_006151.1 + 61867 0.66 0.806906
Target:  5'- gCUcGGC-GCGUCU-GCGcCUGGACCCu -3'
miRNA:   3'- aGAcCUGaCGUAGGuCGC-GACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 63695 0.66 0.824197
Target:  5'- aCUGGGCgUGCGcguUCgCGGCGacgUGGcGCCCg -3'
miRNA:   3'- aGACCUG-ACGU---AG-GUCGCg--ACC-UGGG- -5'
29487 5' -57.5 NC_006151.1 + 65826 0.67 0.761074
Target:  5'- -aUGGGCgGCcgcgCCAGCGC-GG-CCCg -3'
miRNA:   3'- agACCUGaCGua--GGUCGCGaCCuGGG- -5'
29487 5' -57.5 NC_006151.1 + 66339 0.66 0.806024
Target:  5'- cCUGGGCgacGCGaCgCGGCGCUacuacgcGGACCUc -3'
miRNA:   3'- aGACCUGa--CGUaG-GUCGCGA-------CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 73698 0.66 0.840794
Target:  5'- --cGGcuCUGCG-CCGcGUGCUGGGCCa -3'
miRNA:   3'- agaCCu-GACGUaGGU-CGCGACCUGGg -5'
29487 5' -57.5 NC_006151.1 + 80685 0.67 0.761074
Target:  5'- gUCUGGGUUcGCGgcCCGGCGC-GGGCCUc -3'
miRNA:   3'- -AGACCUGA-CGUa-GGUCGCGaCCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 82623 0.67 0.79802
Target:  5'- --cGGGCgccGCggUgGGCGCgGGACCCc -3'
miRNA:   3'- agaCCUGa--CGuaGgUCGCGaCCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 85233 0.68 0.712407
Target:  5'- cCUGGACgcGCugagCCAgGCGCUGG-CCg -3'
miRNA:   3'- aGACCUGa-CGua--GGU-CGCGACCuGGg -5'
29487 5' -57.5 NC_006151.1 + 85764 0.69 0.672194
Target:  5'- gCUGG-CcGCG-CUGGCGCUGGACgCg -3'
miRNA:   3'- aGACCuGaCGUaGGUCGCGACCUGgG- -5'
29487 5' -57.5 NC_006151.1 + 85844 0.75 0.360169
Target:  5'- gCUGGAgCUGCAgaaccgCCAGCGCgugacGGCCCc -3'
miRNA:   3'- aGACCU-GACGUa-----GGUCGCGac---CUGGG- -5'
29487 5' -57.5 NC_006151.1 + 86322 0.66 0.824197
Target:  5'- --gGGGCcgUGCucgCCcGCGCcgUGGGCCCg -3'
miRNA:   3'- agaCCUG--ACGua-GGuCGCG--ACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 98805 0.68 0.712407
Target:  5'- aCUGGgcGCUGCcgCUGGCGUUGGcgguGCgCCa -3'
miRNA:   3'- aGACC--UGACGuaGGUCGCGACC----UG-GG- -5'
29487 5' -57.5 NC_006151.1 + 98963 0.66 0.848813
Target:  5'- -gUGGACgagGC----GGCGCUGGugCCc -3'
miRNA:   3'- agACCUGa--CGuaggUCGCGACCugGG- -5'
29487 5' -57.5 NC_006151.1 + 99108 0.7 0.621256
Target:  5'- --cGGACcaggGCGUgCUGGCGCugcUGGACCCc -3'
miRNA:   3'- agaCCUGa---CGUA-GGUCGCG---ACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 100335 0.67 0.77981
Target:  5'- cCUGGGCacgugGCGUCUGGCGgacgucgUGGACgCCg -3'
miRNA:   3'- aGACCUGa----CGUAGGUCGCg------ACCUG-GG- -5'
29487 5' -57.5 NC_006151.1 + 100463 0.66 0.806906
Target:  5'- --aGGcGCUGCGcgagugcgaGGCGCUGGGCCUg -3'
miRNA:   3'- agaCC-UGACGUagg------UCGCGACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 101197 0.66 0.815634
Target:  5'- -gUGGAC-GCGUgCCuGCGCgaGGGCCa -3'
miRNA:   3'- agACCUGaCGUA-GGuCGCGa-CCUGGg -5'
29487 5' -57.5 NC_006151.1 + 102501 0.68 0.751531
Target:  5'- -aUGGAC-GCcg-CGGCGCgGGACCCc -3'
miRNA:   3'- agACCUGaCGuagGUCGCGaCCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 103402 0.71 0.55047
Target:  5'- gCUGGGCgacuuugCCA-CGCUGGGCCCg -3'
miRNA:   3'- aGACCUGacgua--GGUcGCGACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 104904 0.66 0.822498
Target:  5'- -gUGGACgcgGCGg-CGGCGCgcgaccgcgacgGGGCCCu -3'
miRNA:   3'- agACCUGa--CGUagGUCGCGa-----------CCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.