miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 5' -57.5 NC_006151.1 + 3819 0.66 0.840794
Target:  5'- gCUGGACuuggUGCuggCGGgGCUGGaggGCCCg -3'
miRNA:   3'- aGACCUG----ACGuagGUCgCGACC---UGGG- -5'
29487 5' -57.5 NC_006151.1 + 6089 0.66 0.840794
Target:  5'- --gGGGCUGC-UgCuGCuGCUGGGCCg -3'
miRNA:   3'- agaCCUGACGuAgGuCG-CGACCUGGg -5'
29487 5' -57.5 NC_006151.1 + 11059 0.66 0.813902
Target:  5'- cCUGGACgcgggccacacugUGCGgcggaCCgugccaaguuuagGGCGCUGcGACCCa -3'
miRNA:   3'- aGACCUG-------------ACGUa----GG-------------UCGCGAC-CUGGG- -5'
29487 5' -57.5 NC_006151.1 + 15036 0.67 0.761074
Target:  5'- --aGGuGC-GCGUCCacGGCGCgcgGGGCCCc -3'
miRNA:   3'- agaCC-UGaCGUAGG--UCGCGa--CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 16947 0.7 0.611062
Target:  5'- aUCUGGGCaUGCAgggccucgUCCacucgccggcguGGCGCcaggagcgguugUGGACCCg -3'
miRNA:   3'- -AGACCUG-ACGU--------AGG------------UCGCG------------ACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 17710 0.66 0.840794
Target:  5'- gCUGcuGugUGCGcCCGgguGCGCcgGGGCCCa -3'
miRNA:   3'- aGAC--CugACGUaGGU---CGCGa-CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 21367 0.67 0.79802
Target:  5'- --cGGGCUGCggCCAccCGCUGGGCa- -3'
miRNA:   3'- agaCCUGACGuaGGUc-GCGACCUGgg -5'
29487 5' -57.5 NC_006151.1 + 27333 0.66 0.846428
Target:  5'- --gGGGCUGCuccccgggaccgggGUCguGgGCcgGGGCCCg -3'
miRNA:   3'- agaCCUGACG--------------UAGguCgCGa-CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 31206 0.68 0.712407
Target:  5'- -gUGGcCcGCGUCCAG-GCcGGGCCCc -3'
miRNA:   3'- agACCuGaCGUAGGUCgCGaCCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 34001 0.66 0.840794
Target:  5'- --cGGAgggGCGUcCCGGCGCgccGGCCCg -3'
miRNA:   3'- agaCCUga-CGUA-GGUCGCGac-CUGGG- -5'
29487 5' -57.5 NC_006151.1 + 38773 0.7 0.580601
Target:  5'- --aGGACgaccgGC-UCCGGCGCccgcucGGGCCCa -3'
miRNA:   3'- agaCCUGa----CGuAGGUCGCGa-----CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 39279 0.67 0.79802
Target:  5'- --gGGuGCUGCugcUCuCGGCGCgGGACCUc -3'
miRNA:   3'- agaCC-UGACGu--AG-GUCGCGaCCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 39445 0.72 0.501429
Target:  5'- cCUGGACccggccgcccagUGCG-CCGuGCGCUGG-CCCg -3'
miRNA:   3'- aGACCUG------------ACGUaGGU-CGCGACCuGGG- -5'
29487 5' -57.5 NC_006151.1 + 39508 0.68 0.741884
Target:  5'- gCUGGACUcuaGC-UCCAuCG-UGGGCCCg -3'
miRNA:   3'- aGACCUGA---CGuAGGUcGCgACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 45903 1.03 0.004844
Target:  5'- gUCUGG-CUGCAUCCAGCGCUGGACCCu -3'
miRNA:   3'- -AGACCuGACGUAGGUCGCGACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 49053 0.77 0.261287
Target:  5'- gCUGGcCUucaGCGUCCGGCGCggGGugCCg -3'
miRNA:   3'- aGACCuGA---CGUAGGUCGCGa-CCugGG- -5'
29487 5' -57.5 NC_006151.1 + 49250 0.67 0.795325
Target:  5'- gCUGGGCgcgGCucgugcgcgccgucGUCCAGCGgcuCUGcgaGACCCg -3'
miRNA:   3'- aGACCUGa--CG--------------UAGGUCGC---GAC---CUGGG- -5'
29487 5' -57.5 NC_006151.1 + 50465 0.66 0.81908
Target:  5'- --cGGGCgcucGCG-CCAGCGCggcgcgaccgagccGGACCCc -3'
miRNA:   3'- agaCCUGa---CGUaGGUCGCGa-------------CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 51400 0.67 0.788985
Target:  5'- --gGGGCgagcGCGUCgCAGCGCgUGcACCCg -3'
miRNA:   3'- agaCCUGa---CGUAG-GUCGCG-ACcUGGG- -5'
29487 5' -57.5 NC_006151.1 + 57157 0.66 0.824197
Target:  5'- --gGGGCgaggGCGUCCcccGGCGC-GG-CCCa -3'
miRNA:   3'- agaCCUGa---CGUAGG---UCGCGaCCuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.