miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 5' -57.5 NC_006151.1 + 45903 1.03 0.004844
Target:  5'- gUCUGG-CUGCAUCCAGCGCUGGACCCu -3'
miRNA:   3'- -AGACCuGACGUAGGUCGCGACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 49053 0.77 0.261287
Target:  5'- gCUGGcCUucaGCGUCCGGCGCggGGugCCg -3'
miRNA:   3'- aGACCuGA---CGUAGGUCGCGa-CCugGG- -5'
29487 5' -57.5 NC_006151.1 + 85844 0.75 0.360169
Target:  5'- gCUGGAgCUGCAgaaccgCCAGCGCgugacGGCCCc -3'
miRNA:   3'- aGACCU-GACGUa-----GGUCGCGac---CUGGG- -5'
29487 5' -57.5 NC_006151.1 + 39445 0.72 0.501429
Target:  5'- cCUGGACccggccgcccagUGCG-CCGuGCGCUGG-CCCg -3'
miRNA:   3'- aGACCUG------------ACGUaGGU-CGCGACCuGGG- -5'
29487 5' -57.5 NC_006151.1 + 132808 0.71 0.55047
Target:  5'- gCUGGuACagcGCGUCCGG-GCUGGccGCCCg -3'
miRNA:   3'- aGACC-UGa--CGUAGGUCgCGACC--UGGG- -5'
29487 5' -57.5 NC_006151.1 + 118719 0.71 0.55047
Target:  5'- cUCUGccgccuGCUGCAcggCUAcGUGCUGGGCCCg -3'
miRNA:   3'- -AGACc-----UGACGUa--GGU-CGCGACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 103402 0.71 0.55047
Target:  5'- gCUGGGCgacuuugCCA-CGCUGGGCCCg -3'
miRNA:   3'- aGACCUGacgua--GGUcGCGACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 106321 0.7 0.580601
Target:  5'- gCUGGACgcggUGCuggaCCGcGCGCUGGACgCg -3'
miRNA:   3'- aGACCUG----ACGua--GGU-CGCGACCUGgG- -5'
29487 5' -57.5 NC_006151.1 + 38773 0.7 0.580601
Target:  5'- --aGGACgaccgGC-UCCGGCGCccgcucGGGCCCa -3'
miRNA:   3'- agaCCUGa----CGuAGGUCGCGa-----CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 16947 0.7 0.611062
Target:  5'- aUCUGGGCaUGCAgggccucgUCCacucgccggcguGGCGCcaggagcgguugUGGACCCg -3'
miRNA:   3'- -AGACCUG-ACGU--------AGG------------UCGCG------------ACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 99108 0.7 0.621256
Target:  5'- --cGGACcaggGCGUgCUGGCGCugcUGGACCCc -3'
miRNA:   3'- agaCCUGa---CGUA-GGUCGCG---ACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 116981 0.7 0.631459
Target:  5'- gCUGGACgUGa----GGCGCUGGugCCg -3'
miRNA:   3'- aGACCUG-ACguaggUCGCGACCugGG- -5'
29487 5' -57.5 NC_006151.1 + 121756 0.7 0.631459
Target:  5'- aCUGGAgaUGCuga-AGCGCUGcGACCCc -3'
miRNA:   3'- aGACCUg-ACGuaggUCGCGAC-CUGGG- -5'
29487 5' -57.5 NC_006151.1 + 121428 0.69 0.651857
Target:  5'- gUCgcgGGGCUcGCG-CCGGCcucGCUGGugCCc -3'
miRNA:   3'- -AGa--CCUGA-CGUaGGUCG---CGACCugGG- -5'
29487 5' -57.5 NC_006151.1 + 106171 0.69 0.66102
Target:  5'- gCUGGACcGCGUcgcgcacCCGcCGCUGGAgCCg -3'
miRNA:   3'- aGACCUGaCGUA-------GGUcGCGACCUgGG- -5'
29487 5' -57.5 NC_006151.1 + 85764 0.69 0.672194
Target:  5'- gCUGG-CcGCG-CUGGCGCUGGACgCg -3'
miRNA:   3'- aGACCuGaCGUaGGUCGCGACCUGgG- -5'
29487 5' -57.5 NC_006151.1 + 111457 0.69 0.672194
Target:  5'- --aGGcGCUGCGUCUgcgaGGCGUcgucgGGGCCCa -3'
miRNA:   3'- agaCC-UGACGUAGG----UCGCGa----CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 125382 0.69 0.6924
Target:  5'- gCUGGGCcGCAUCgCGGCcGCcUGGugCg -3'
miRNA:   3'- aGACCUGaCGUAG-GUCG-CG-ACCugGg -5'
29487 5' -57.5 NC_006151.1 + 85233 0.68 0.712407
Target:  5'- cCUGGACgcGCugagCCAgGCGCUGG-CCg -3'
miRNA:   3'- aGACCUGa-CGua--GGU-CGCGACCuGGg -5'
29487 5' -57.5 NC_006151.1 + 31206 0.68 0.712407
Target:  5'- -gUGGcCcGCGUCCAG-GCcGGGCCCc -3'
miRNA:   3'- agACCuGaCGUAGGUCgCGaCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.