miRNA display CGI


Results 61 - 80 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 32647 0.67 0.607324
Target:  5'- -cCUCGCCGCCGgccccuuCCCCGUuucCCCGu -3'
miRNA:   3'- gaGAGUGGUGGCaac----GGGGCGc--GGGC- -5'
29488 3' -61.6 NC_006151.1 + 73111 0.67 0.607324
Target:  5'- -cCUCGCCGgCGgcGCgCCCGCGCg-- -3'
miRNA:   3'- gaGAGUGGUgGCaaCG-GGGCGCGggc -5'
29488 3' -61.6 NC_006151.1 + 81772 0.67 0.607324
Target:  5'- ---gCGCCACCGggacgcGCUCggCGCGCCCGu -3'
miRNA:   3'- gagaGUGGUGGCaa----CGGG--GCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 107838 0.67 0.607324
Target:  5'- ---cCGCCcuacCCGgcgacgGCCCCgGCGCCCGa -3'
miRNA:   3'- gagaGUGGu---GGCaa----CGGGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 69757 0.67 0.597505
Target:  5'- ----gACCGCCGggGCCaCGCGCCgCGc -3'
miRNA:   3'- gagagUGGUGGCaaCGGgGCGCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 58742 0.67 0.597505
Target:  5'- gUCgcgCAgCGCCGcgGCCaCCGCGgCCGc -3'
miRNA:   3'- gAGa--GUgGUGGCaaCGG-GGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 38795 0.67 0.597505
Target:  5'- gCUCggGCCcaugcCCGagcaCCCCGCGCCCGa -3'
miRNA:   3'- -GAGagUGGu----GGCaac-GGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 141900 0.67 0.58771
Target:  5'- gCUC-CACCuCCacgcGCCCCGCGgCCGu -3'
miRNA:   3'- -GAGaGUGGuGGcaa-CGGGGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 87507 0.67 0.58771
Target:  5'- uUCagGCCGCC---GCCCCggccGCGCCCGc -3'
miRNA:   3'- gAGagUGGUGGcaaCGGGG----CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 117904 0.67 0.577944
Target:  5'- cCUCUCucuucaccccGCCGCCGga--CCCGUccGCCCGg -3'
miRNA:   3'- -GAGAG----------UGGUGGCaacgGGGCG--CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 107106 0.67 0.577944
Target:  5'- gCUCUgggCGCCGCCcgaGCCgCCGCgacGCCCGg -3'
miRNA:   3'- -GAGA---GUGGUGGcaaCGG-GGCG---CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 114664 0.67 0.576969
Target:  5'- -cCUCGCCcgugagcGCCGcgaagGCCUCGUGCUCGa -3'
miRNA:   3'- gaGAGUGG-------UGGCaa---CGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 38888 0.67 0.576969
Target:  5'- -cCUCGCCGCCuacUGCccgcccgagguggCCCGCGCCuCGu -3'
miRNA:   3'- gaGAGUGGUGGca-ACG-------------GGGCGCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 112436 0.68 0.568214
Target:  5'- ---gCGCCGCCGccGCCgCGCGCCa- -3'
miRNA:   3'- gagaGUGGUGGCaaCGGgGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 1676 0.68 0.558526
Target:  5'- cCUC-CGCCGCCGa-GCCCUcCGCCgCGg -3'
miRNA:   3'- -GAGaGUGGUGGCaaCGGGGcGCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 37299 0.68 0.558526
Target:  5'- cCUCUCGCUcaugGCCGacggGCCCC-CGCCg- -3'
miRNA:   3'- -GAGAGUGG----UGGCaa--CGGGGcGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 35848 0.68 0.558526
Target:  5'- uUCUcCGCCGCCcgcuCUCCGCGCUCGg -3'
miRNA:   3'- gAGA-GUGGUGGcaacGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 24862 0.68 0.558526
Target:  5'- uUCagCACCACCGUguCCgCCuCGCCCGg -3'
miRNA:   3'- gAGa-GUGGUGGCAacGG-GGcGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 14996 0.68 0.558526
Target:  5'- gUCgagCACC-CCGaguacggGCCCC-CGCCCGa -3'
miRNA:   3'- gAGa--GUGGuGGCaa-----CGGGGcGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 131336 0.68 0.558526
Target:  5'- -cCUCACCcCCGcgccgGCCCC-CGCUCGu -3'
miRNA:   3'- gaGAGUGGuGGCaa---CGGGGcGCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.