miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 78491 0.66 0.636856
Target:  5'- gCUCgugaaCGCCGCCGUggugcacGcCCCCGCGaucgcggaCCCGg -3'
miRNA:   3'- -GAGa----GUGGUGGCAa------C-GGGGCGC--------GGGC- -5'
29488 3' -61.6 NC_006151.1 + 98052 0.66 0.636856
Target:  5'- ---gCACCACCa--GCCCCggGCGCUCGg -3'
miRNA:   3'- gagaGUGGUGGcaaCGGGG--CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 45527 0.66 0.633901
Target:  5'- gUCgaccCACCGCgGgaggGCCCgcuucccacgacggCGCGCCCGg -3'
miRNA:   3'- gAGa---GUGGUGgCaa--CGGG--------------GCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 45717 0.66 0.633901
Target:  5'- uCUCUCggagacggacgaccACCGCCGagGCuUCCaGCGCCUGg -3'
miRNA:   3'- -GAGAG--------------UGGUGGCaaCG-GGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 91788 0.66 0.633901
Target:  5'- --aUCACCGCCcggcuuauaugcgcGggaUGCCCCGC-CCCGc -3'
miRNA:   3'- gagAGUGGUGG--------------Ca--ACGGGGCGcGGGC- -5'
29488 3' -61.6 NC_006151.1 + 86178 0.67 0.627006
Target:  5'- aUCgUgGCCGCCGcgcUGCCCCcggcGgGCCCGc -3'
miRNA:   3'- gAG-AgUGGUGGCa--ACGGGG----CgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 69626 0.67 0.627006
Target:  5'- aUCUCGCgGUCGgcGUCCCGCGCgUGc -3'
miRNA:   3'- gAGAGUGgUGGCaaCGGGGCGCGgGC- -5'
29488 3' -61.6 NC_006151.1 + 62446 0.67 0.627006
Target:  5'- gUCcgCGCCugCaucGCCcaCCGCGCCCGg -3'
miRNA:   3'- gAGa-GUGGugGcaaCGG--GGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 140417 0.67 0.627006
Target:  5'- -aCUCGCCcgucccGCUGgaggaguacgUGCCCgGCGCCUGc -3'
miRNA:   3'- gaGAGUGG------UGGCa---------ACGGGgCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 135191 0.67 0.627006
Target:  5'- ---cCGCCGCCGggccaGUCCCaGCGUCCGc -3'
miRNA:   3'- gagaGUGGUGGCaa---CGGGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 109374 0.67 0.626021
Target:  5'- cCUCUuccgcccccgccgCACCACCGccgGCCCCaccaccuucGCGgCCGg -3'
miRNA:   3'- -GAGA-------------GUGGUGGCaa-CGGGG---------CGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 77193 0.67 0.625036
Target:  5'- gUC-CGCCGCCGcguccuccauCCCCGCGCCg- -3'
miRNA:   3'- gAGaGUGGUGGCaac-------GGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 87306 0.67 0.621097
Target:  5'- -cCUCGCCcguggcgcacgccguGCCGgcGCuCCCGgGCCUGc -3'
miRNA:   3'- gaGAGUGG---------------UGGCaaCG-GGGCgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 109449 0.67 0.61716
Target:  5'- -cUUCGCgGCCG--GCCCCGaCGCCgGa -3'
miRNA:   3'- gaGAGUGgUGGCaaCGGGGC-GCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 61428 0.67 0.61716
Target:  5'- -cCUCGgccCCGCCGcgGCgcccgCCCGCGUCCGc -3'
miRNA:   3'- gaGAGU---GGUGGCaaCG-----GGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 110175 0.67 0.61716
Target:  5'- -gCUCAUCGCCGcgUGCCgCCugauaGCGCgCCGc -3'
miRNA:   3'- gaGAGUGGUGGCa-ACGG-GG-----CGCG-GGC- -5'
29488 3' -61.6 NC_006151.1 + 52583 0.67 0.61716
Target:  5'- -aCUCGgCGCUGccGCCCUGCGCgUGg -3'
miRNA:   3'- gaGAGUgGUGGCaaCGGGGCGCGgGC- -5'
29488 3' -61.6 NC_006151.1 + 108893 0.67 0.616175
Target:  5'- gCUCUUguuCCGcgaaggcCCGUaucgGCCCCGCGCCa- -3'
miRNA:   3'- -GAGAGu--GGU-------GGCAa---CGGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 137421 0.67 0.615191
Target:  5'- -cCUCGCCGCCGccgcgggguccGCCuCCGCGgCCu -3'
miRNA:   3'- gaGAGUGGUGGCaa---------CGG-GGCGCgGGc -5'
29488 3' -61.6 NC_006151.1 + 81772 0.67 0.607324
Target:  5'- ---gCGCCACCGggacgcGCUCggCGCGCCCGu -3'
miRNA:   3'- gagaGUGGUGGCaa----CGGG--GCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.