miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 110147 0.66 0.666357
Target:  5'- ---gCGCCACCGgacucgggGCCCUG-GCCCu -3'
miRNA:   3'- gagaGUGGUGGCaa------CGGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 52482 0.66 0.666357
Target:  5'- ----gGCCGCCGUgacgGCCUCGggcgccaGCCCGg -3'
miRNA:   3'- gagagUGGUGGCAa---CGGGGCg------CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 37344 0.66 0.656539
Target:  5'- -gCUCACC-CCGcucggggaGCCCUG-GCCCGg -3'
miRNA:   3'- gaGAGUGGuGGCaa------CGGGGCgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 108048 0.66 0.656539
Target:  5'- -aCUCAgCCGCCGa---CCCGgGCCCa -3'
miRNA:   3'- gaGAGU-GGUGGCaacgGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 5877 0.66 0.656539
Target:  5'- ----gGCCGCCGgggGCCCCG-GCCUc -3'
miRNA:   3'- gagagUGGUGGCaa-CGGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 2952 0.66 0.656539
Target:  5'- aCUCcacggCGCCggcgaaGCCGagGUCCCGCGCCg- -3'
miRNA:   3'- -GAGa----GUGG------UGGCaaCGGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 31339 0.66 0.656539
Target:  5'- -cCUCGgCGCCGUggGCCcgaccccgguCCGCGCCgGc -3'
miRNA:   3'- gaGAGUgGUGGCAa-CGG----------GGCGCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 52359 0.66 0.656539
Target:  5'- gUCgUCGuCCGCCGgcgcGCCCCcgGgGCCCGc -3'
miRNA:   3'- gAG-AGU-GGUGGCaa--CGGGG--CgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 76874 0.66 0.656539
Target:  5'- ---cCGCCGCCaGgaGCCCCaGCGCCg- -3'
miRNA:   3'- gagaGUGGUGG-CaaCGGGG-CGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 120327 0.66 0.656539
Target:  5'- cCUCUCGgaCGCCGcgcGCgCCCGCGUggCCGg -3'
miRNA:   3'- -GAGAGUg-GUGGCaa-CG-GGGCGCG--GGC- -5'
29488 3' -61.6 NC_006151.1 + 32055 0.66 0.656539
Target:  5'- cCUCUgcaGCCGCCGcccGCgCCGCGaCCGg -3'
miRNA:   3'- -GAGAg--UGGUGGCaa-CGgGGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 35065 0.66 0.646703
Target:  5'- gCUCgcuagCACCACgggggugggucgCGUgccgagcaugcGCCUCGCGCCCGc -3'
miRNA:   3'- -GAGa----GUGGUG------------GCAa----------CGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 17198 0.66 0.646703
Target:  5'- --aUCGggGCCG-UGCCCCGgGCCCc -3'
miRNA:   3'- gagAGUggUGGCaACGGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 31192 0.66 0.646703
Target:  5'- gUC-CGCCGCacaGUgUGgCCCGCGUCCa -3'
miRNA:   3'- gAGaGUGGUGg--CA-ACgGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 64162 0.66 0.646703
Target:  5'- cCUCcuUCGCC-CCGU--CCCCGCcCCCGu -3'
miRNA:   3'- -GAG--AGUGGuGGCAacGGGGCGcGGGC- -5'
29488 3' -61.6 NC_006151.1 + 107705 0.66 0.646703
Target:  5'- ---cCGCCGCCGgcaccaagGCCgCCGCgGCCCc -3'
miRNA:   3'- gagaGUGGUGGCaa------CGG-GGCG-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 111387 0.66 0.646703
Target:  5'- gUCgUCGCCGCCGccgGCaCCCcCGCCgGg -3'
miRNA:   3'- gAG-AGUGGUGGCaa-CG-GGGcGCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 69515 0.66 0.637841
Target:  5'- cCUC-CGCCGCCGcgccgcgcgagggcGCCCUGCaucaGCCCGc -3'
miRNA:   3'- -GAGaGUGGUGGCaa------------CGGGGCG----CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 51461 0.66 0.636856
Target:  5'- -aCUCGCaCACgGUcUGCCCacagcccgacUGCGCCCa -3'
miRNA:   3'- gaGAGUG-GUGgCA-ACGGG----------GCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 78491 0.66 0.636856
Target:  5'- gCUCgugaaCGCCGCCGUggugcacGcCCCCGCGaucgcggaCCCGg -3'
miRNA:   3'- -GAGa----GUGGUGGCAa------C-GGGGCGC--------GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.