miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 101646 0.72 0.349492
Target:  5'- -gUUCGCCGCCGUg--CCCGCGCUCu -3'
miRNA:   3'- gaGAGUGGUGGCAacgGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 108007 0.71 0.357039
Target:  5'- ---cCACCGCCGccGCCaccaCCGCGCCCa -3'
miRNA:   3'- gagaGUGGUGGCaaCGG----GGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 56529 0.71 0.357039
Target:  5'- cCUCuUCGCCGCCGgguucggGCCCC-UGCUCGg -3'
miRNA:   3'- -GAG-AGUGGUGGCaa-----CGGGGcGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 27209 0.71 0.364699
Target:  5'- ----aGgCGCCGggGCCCCGCGCgCCGu -3'
miRNA:   3'- gagagUgGUGGCaaCGGGGCGCG-GGC- -5'
29488 3' -61.6 NC_006151.1 + 16891 0.71 0.364699
Target:  5'- -gCUCGCguCCGUUGCC--GCGCCCGc -3'
miRNA:   3'- gaGAGUGguGGCAACGGggCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 36609 0.71 0.372473
Target:  5'- cCUCcccCGCCGCCGggccgGUCUCgGCGCCCGg -3'
miRNA:   3'- -GAGa--GUGGUGGCaa---CGGGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 36798 0.71 0.379564
Target:  5'- aCUCcacCACCACCGUcGCCgucgagaCCGuCGCCCGc -3'
miRNA:   3'- -GAGa--GUGGUGGCAaCGG-------GGC-GCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 81328 0.71 0.380358
Target:  5'- cCUC-CGCCcccucguCCGUcgccGCCgCCGCGCCCGg -3'
miRNA:   3'- -GAGaGUGGu------GGCAa---CGG-GGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 62684 0.71 0.380358
Target:  5'- uCUCUCGCCGCCccugucccuuGUccccggucccGCCCCGCcGCCCu -3'
miRNA:   3'- -GAGAGUGGUGG----------CAa---------CGGGGCG-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 87097 0.71 0.380358
Target:  5'- -cCUCGCCGCCGUgGUCUCGuCGCuCCa -3'
miRNA:   3'- gaGAGUGGUGGCAaCGGGGC-GCG-GGc -5'
29488 3' -61.6 NC_006151.1 + 118969 0.71 0.385944
Target:  5'- gCUCgUCGCCGCCGgcgUGuacgacgaggagccCCCCGCGCUgGa -3'
miRNA:   3'- -GAG-AGUGGUGGCa--AC--------------GGGGCGCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 23110 0.71 0.388354
Target:  5'- -cCUCGuCCuCCucgGCCCCGCGCCCc -3'
miRNA:   3'- gaGAGU-GGuGGcaaCGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 99520 0.71 0.388354
Target:  5'- ---gCGCCACUGcaugGCgCCGCGCCCGc -3'
miRNA:   3'- gagaGUGGUGGCaa--CGgGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 73970 0.71 0.388354
Target:  5'- --gUgGCCACCGUgGCcaugCCCGCGUCCGg -3'
miRNA:   3'- gagAgUGGUGGCAaCG----GGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 107587 0.71 0.39646
Target:  5'- aCUCcCGCCGCCaagcugGCCCCGCcggcgccgccGCCCGc -3'
miRNA:   3'- -GAGaGUGGUGGcaa---CGGGGCG----------CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 9032 0.7 0.404674
Target:  5'- cCUCcCGcCCGCCGgggcGCCCCGCGUgcuCCGg -3'
miRNA:   3'- -GAGaGU-GGUGGCaa--CGGGGCGCG---GGC- -5'
29488 3' -61.6 NC_006151.1 + 119518 0.7 0.42142
Target:  5'- -gCUCugCgACCGc-GCCUCGCGCCCc -3'
miRNA:   3'- gaGAGugG-UGGCaaCGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 106579 0.7 0.429948
Target:  5'- gCUCUCGgCGCUGUgguccGCCCUGCaGCCgGa -3'
miRNA:   3'- -GAGAGUgGUGGCAa----CGGGGCG-CGGgC- -5'
29488 3' -61.6 NC_006151.1 + 39839 0.7 0.429948
Target:  5'- gUCUCcugcgGCCGCCGggGCCUCGCcgagcuccgcgGCCCc -3'
miRNA:   3'- gAGAG-----UGGUGGCaaCGGGGCG-----------CGGGc -5'
29488 3' -61.6 NC_006151.1 + 38524 0.7 0.429948
Target:  5'- gCUCcccCGCCGCCGgcccgGaCCCaGCGCCCGa -3'
miRNA:   3'- -GAGa--GUGGUGGCaa---C-GGGgCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.