miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 44969 1.08 0.001126
Target:  5'- cCUCUCACCACCGUUGCCCCGCGCCCGu -3'
miRNA:   3'- -GAGAGUGGUGGCAACGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 39109 0.79 0.124298
Target:  5'- -gCUCugCGCCGagcccgccgagggcGCCCCGCGCCCGg -3'
miRNA:   3'- gaGAGugGUGGCaa------------CGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 31020 0.77 0.155024
Target:  5'- --gUCGCCGCCGcgGCCCuCGCGgCCCGg -3'
miRNA:   3'- gagAGUGGUGGCaaCGGG-GCGC-GGGC- -5'
29488 3' -61.6 NC_006151.1 + 89215 0.77 0.158878
Target:  5'- -cCUCGCUGCUGUUGCCgCCGCcGCCCc -3'
miRNA:   3'- gaGAGUGGUGGCAACGG-GGCG-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 18743 0.76 0.17517
Target:  5'- gUCgcCGCCGCCGggGCCCCacgggGUGCCCGg -3'
miRNA:   3'- gAGa-GUGGUGGCaaCGGGG-----CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 108285 0.76 0.179035
Target:  5'- cCUC-CACCACCGUcUGCCCCGgcggcgacccccaCGCCCc -3'
miRNA:   3'- -GAGaGUGGUGGCA-ACGGGGC-------------GCGGGc -5'
29488 3' -61.6 NC_006151.1 + 122413 0.76 0.179469
Target:  5'- -gCUCGCCGCCGUggacGCCgCCGagGCCCGg -3'
miRNA:   3'- gaGAGUGGUGGCAa---CGG-GGCg-CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 10539 0.76 0.197614
Target:  5'- cCUCUCcacGCC-CCGUUccGCCCgGCGCCCa -3'
miRNA:   3'- -GAGAG---UGGuGGCAA--CGGGgCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 2169 0.75 0.217339
Target:  5'- -cCUCGCCgggGCCG--GCCCCgGCGCCCGa -3'
miRNA:   3'- gaGAGUGG---UGGCaaCGGGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 80629 0.75 0.217339
Target:  5'- uCUCUCcCCccCCGUcucCCCCGCGCCCGa -3'
miRNA:   3'- -GAGAGuGGu-GGCAac-GGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 125193 0.74 0.238725
Target:  5'- -cCUCGCCGgCGUcguggGCCCCGCgGCCCc -3'
miRNA:   3'- gaGAGUGGUgGCAa----CGGGGCG-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 12019 0.73 0.293257
Target:  5'- uCUCUC-CCGCCGgcgcaaCCCCGgGCCCu -3'
miRNA:   3'- -GAGAGuGGUGGCaac---GGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 37167 0.73 0.293257
Target:  5'- gUCUCcgccggcgcCCGCCGcgGCCCCGCgGCCCu -3'
miRNA:   3'- gAGAGu--------GGUGGCaaCGGGGCG-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 109806 0.73 0.299883
Target:  5'- gUUUgCGCCGCCG--GCCCCGCGCUCc -3'
miRNA:   3'- gAGA-GUGGUGGCaaCGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 60677 0.73 0.299883
Target:  5'- gUCgcCGCCGCCGUccuCCCgCGCGCCCGc -3'
miRNA:   3'- gAGa-GUGGUGGCAac-GGG-GCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 47941 0.72 0.31348
Target:  5'- -cUUCGCCACgcuccaGUUGCCCCGCccCCCGg -3'
miRNA:   3'- gaGAGUGGUGg-----CAACGGGGCGc-GGGC- -5'
29488 3' -61.6 NC_006151.1 + 120878 0.72 0.320452
Target:  5'- gCUC-CGCU-CCGUcaugGCCUCGCGCCCGc -3'
miRNA:   3'- -GAGaGUGGuGGCAa---CGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 12824 0.72 0.320452
Target:  5'- cCUCUCcCCGCCGcc-CCCCGCGgCCa -3'
miRNA:   3'- -GAGAGuGGUGGCaacGGGGCGCgGGc -5'
29488 3' -61.6 NC_006151.1 + 78689 0.72 0.327539
Target:  5'- gCUCUaCGCCgGCCGggGCCUCGuCGCCgCGa -3'
miRNA:   3'- -GAGA-GUGG-UGGCaaCGGGGC-GCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 107526 0.72 0.334741
Target:  5'- -gCUC-CCGCCGUUgGCCCCGgCgGCCCc -3'
miRNA:   3'- gaGAGuGGUGGCAA-CGGGGC-G-CGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.