miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 1676 0.68 0.558526
Target:  5'- cCUC-CGCCGCCGa-GCCCUcCGCCgCGg -3'
miRNA:   3'- -GAGaGUGGUGGCaaCGGGGcGCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 2169 0.75 0.217339
Target:  5'- -cCUCGCCgggGCCG--GCCCCgGCGCCCGa -3'
miRNA:   3'- gaGAGUGG---UGGCaaCGGGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 2952 0.66 0.656539
Target:  5'- aCUCcacggCGCCggcgaaGCCGagGUCCCGCGCCg- -3'
miRNA:   3'- -GAGa----GUGG------UGGCaaCGGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 5877 0.66 0.656539
Target:  5'- ----gGCCGCCGgggGCCCCG-GCCUc -3'
miRNA:   3'- gagagUGGUGGCaa-CGGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 6745 0.69 0.456126
Target:  5'- uUCUCGCCcgcuuccucuGCCGUcUGCUuuGCauGCCCGg -3'
miRNA:   3'- gAGAGUGG----------UGGCA-ACGGggCG--CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 7639 0.66 0.685908
Target:  5'- gUCgCcCCACCcgcGCCUCGCGCUCGg -3'
miRNA:   3'- gAGaGuGGUGGcaaCGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 8711 0.68 0.520298
Target:  5'- gUCUCcgucuCCGCCGUcGCCUCG-GUCCGa -3'
miRNA:   3'- gAGAGu----GGUGGCAaCGGGGCgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 8926 0.66 0.666357
Target:  5'- cCUCUCcCCGCCcccGCCCCcUGuCCCGg -3'
miRNA:   3'- -GAGAGuGGUGGcaaCGGGGcGC-GGGC- -5'
29488 3' -61.6 NC_006151.1 + 9032 0.7 0.404674
Target:  5'- cCUCcCGcCCGCCGgggcGCCCCGCGUgcuCCGg -3'
miRNA:   3'- -GAGaGU-GGUGGCaa--CGGGGCGCG---GGC- -5'
29488 3' -61.6 NC_006151.1 + 9165 0.66 0.676149
Target:  5'- cCUCUCcccccuCCACCGcccGCCCU-CGCCCc -3'
miRNA:   3'- -GAGAGu-----GGUGGCaa-CGGGGcGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 10539 0.76 0.197614
Target:  5'- cCUCUCcacGCC-CCGUUccGCCCgGCGCCCa -3'
miRNA:   3'- -GAGAG---UGGuGGCAA--CGGGgCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 12019 0.73 0.293257
Target:  5'- uCUCUC-CCGCCGgcgcaaCCCCGgGCCCu -3'
miRNA:   3'- -GAGAGuGGUGGCaac---GGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 12092 0.67 0.607324
Target:  5'- uCUCUCAcCCGCCc---UCCCGCGCUCu -3'
miRNA:   3'- -GAGAGU-GGUGGcaacGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 12824 0.72 0.320452
Target:  5'- cCUCUCcCCGCCGcc-CCCCGCGgCCa -3'
miRNA:   3'- -GAGAGuGGUGGCaacGGGGCGCgGGc -5'
29488 3' -61.6 NC_006151.1 + 12933 0.68 0.520298
Target:  5'- uCUCUC-CCGCCGgUGUuuuCCCaCGCCCa -3'
miRNA:   3'- -GAGAGuGGUGGCaACG---GGGcGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 13596 0.69 0.483138
Target:  5'- --aUC-CCGCCGuUUGCCCCacGUGCCCc -3'
miRNA:   3'- gagAGuGGUGGC-AACGGGG--CGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 14889 0.68 0.520298
Target:  5'- uUCUCGCCcgucgacccGCCcggGCCCCG-GCCCa -3'
miRNA:   3'- gAGAGUGG---------UGGcaaCGGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 14996 0.68 0.558526
Target:  5'- gUCgagCACC-CCGaguacggGCCCC-CGCCCGa -3'
miRNA:   3'- gAGa--GUGGuGGCaa-----CGGGGcGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 16891 0.71 0.364699
Target:  5'- -gCUCGCguCCGUUGCC--GCGCCCGc -3'
miRNA:   3'- gaGAGUGguGGCAACGGggCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 17198 0.66 0.646703
Target:  5'- --aUCGggGCCG-UGCCCCGgGCCCc -3'
miRNA:   3'- gagAGUggUGGCaACGGGGCgCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.