miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 141900 0.67 0.58771
Target:  5'- gCUC-CACCuCCacgcGCCCCGCGgCCGu -3'
miRNA:   3'- -GAGaGUGGuGGcaa-CGGGGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 140417 0.67 0.627006
Target:  5'- -aCUCGCCcgucccGCUGgaggaguacgUGCCCgGCGCCUGc -3'
miRNA:   3'- gaGAGUGG------UGGCa---------ACGGGgCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 139150 0.68 0.539297
Target:  5'- gUCUUcCCGCUGUacgCCCGCGCCCu -3'
miRNA:   3'- gAGAGuGGUGGCAacgGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 137421 0.67 0.615191
Target:  5'- -cCUCGCCGCCGccgcgggguccGCCuCCGCGgCCu -3'
miRNA:   3'- gaGAGUGGUGGCaa---------CGG-GGCGCgGGc -5'
29488 3' -61.6 NC_006151.1 + 137255 0.69 0.501567
Target:  5'- aCUUUCGCC-UCGcgcGCCCgGUGCCCGc -3'
miRNA:   3'- -GAGAGUGGuGGCaa-CGGGgCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 136870 0.69 0.456126
Target:  5'- --gUgACCGCCGUcgaggagcGCCUCGCGCCCc -3'
miRNA:   3'- gagAgUGGUGGCAa-------CGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 136836 0.69 0.483138
Target:  5'- gCUCUgcgaCGCgGCCGccgGCCUCGCGCgCCGc -3'
miRNA:   3'- -GAGA----GUGgUGGCaa-CGGGGCGCG-GGC- -5'
29488 3' -61.6 NC_006151.1 + 136027 0.66 0.676149
Target:  5'- -cCUgACCAUgGUccucgagcaggUGCgCCCGCGCaCCGg -3'
miRNA:   3'- gaGAgUGGUGgCA-----------ACG-GGGCGCG-GGC- -5'
29488 3' -61.6 NC_006151.1 + 135614 0.66 0.666357
Target:  5'- cCUCcCACgGCCGcgGCgCCCGCaccaCCCGg -3'
miRNA:   3'- -GAGaGUGgUGGCaaCG-GGGCGc---GGGC- -5'
29488 3' -61.6 NC_006151.1 + 135191 0.67 0.627006
Target:  5'- ---cCGCCGCCGggccaGUCCCaGCGUCCGc -3'
miRNA:   3'- gagaGUGGUGGCaa---CGGGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 134316 0.68 0.548886
Target:  5'- ---aCGCCGCUGc-GCCUCGCGCCgGg -3'
miRNA:   3'- gagaGUGGUGGCaaCGGGGCGCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 131553 0.7 0.447303
Target:  5'- cCUCgggCGCCGCaCGg-GCCCCGCGUCg- -3'
miRNA:   3'- -GAGa--GUGGUG-GCaaCGGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 131336 0.68 0.558526
Target:  5'- -cCUCACCcCCGcgccgGCCCC-CGCUCGu -3'
miRNA:   3'- gaGAGUGGuGGCaa---CGGGGcGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 125193 0.74 0.238725
Target:  5'- -cCUCGCCGgCGUcguggGCCCCGCgGCCCc -3'
miRNA:   3'- gaGAGUGGUgGCAa----CGGGGCG-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 122413 0.76 0.179469
Target:  5'- -gCUCGCCGCCGUggacGCCgCCGagGCCCGg -3'
miRNA:   3'- gaGAGUGGUGGCAa---CGG-GGCg-CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 120878 0.72 0.320452
Target:  5'- gCUC-CGCU-CCGUcaugGCCUCGCGCCCGc -3'
miRNA:   3'- -GAGaGUGGuGGCAa---CGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 120327 0.66 0.656539
Target:  5'- cCUCUCGgaCGCCGcgcGCgCCCGCGUggCCGg -3'
miRNA:   3'- -GAGAGUg-GUGGCaa-CG-GGGCGCG--GGC- -5'
29488 3' -61.6 NC_006151.1 + 119518 0.7 0.42142
Target:  5'- -gCUCugCgACCGc-GCCUCGCGCCCc -3'
miRNA:   3'- gaGAGugG-UGGCaaCGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 118969 0.71 0.385944
Target:  5'- gCUCgUCGCCGCCGgcgUGuacgacgaggagccCCCCGCGCUgGa -3'
miRNA:   3'- -GAG-AGUGGUGGCa--AC--------------GGGGCGCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 118351 0.66 0.636856
Target:  5'- uCUCgcgCGCCugCGagGCggCgCGCGCCCGc -3'
miRNA:   3'- -GAGa--GUGGugGCaaCG--GgGCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.