miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 18743 0.76 0.17517
Target:  5'- gUCgcCGCCGCCGggGCCCCacgggGUGCCCGg -3'
miRNA:   3'- gAGa-GUGGUGGCaaCGGGG-----CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 20277 0.69 0.492313
Target:  5'- ---gCACCAuggcuaucuucCCGggGCCCCggGCGCCCGc -3'
miRNA:   3'- gagaGUGGU-----------GGCaaCGGGG--CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 20360 0.66 0.676149
Target:  5'- uUCagCACCAUCG-UGCCguUCGCGUCCa -3'
miRNA:   3'- gAGa-GUGGUGGCaACGG--GGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 23110 0.71 0.388354
Target:  5'- -cCUCGuCCuCCucgGCCCCGCGCCCc -3'
miRNA:   3'- gaGAGU-GGuGGcaaCGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 24406 0.66 0.685908
Target:  5'- gUCUCGaagagCACCac--CCCCGCGCCCc -3'
miRNA:   3'- gAGAGUg----GUGGcaacGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 24862 0.68 0.558526
Target:  5'- uUCagCACCACCGUguCCgCCuCGCCCGg -3'
miRNA:   3'- gAGa-GUGGUGGCAacGG-GGcGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 25398 0.68 0.510897
Target:  5'- uUCUCgACCgcgacgggggcGCCGccGCCCCacgcGCGCCCGu -3'
miRNA:   3'- gAGAG-UGG-----------UGGCaaCGGGG----CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 27209 0.71 0.364699
Target:  5'- ----aGgCGCCGggGCCCCGCGCgCCGu -3'
miRNA:   3'- gagagUgGUGGCaaCGGGGCGCG-GGC- -5'
29488 3' -61.6 NC_006151.1 + 29229 0.7 0.447303
Target:  5'- --gUCACCGCCGggucgGCCgCGC-CCCGa -3'
miRNA:   3'- gagAGUGGUGGCaa---CGGgGCGcGGGC- -5'
29488 3' -61.6 NC_006151.1 + 31020 0.77 0.155024
Target:  5'- --gUCGCCGCCGcgGCCCuCGCGgCCCGg -3'
miRNA:   3'- gagAGUGGUGGCaaCGGG-GCGC-GGGC- -5'
29488 3' -61.6 NC_006151.1 + 31192 0.66 0.646703
Target:  5'- gUC-CGCCGCacaGUgUGgCCCGCGUCCa -3'
miRNA:   3'- gAGaGUGGUGg--CA-ACgGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 31339 0.66 0.656539
Target:  5'- -cCUCGgCGCCGUggGCCcgaccccgguCCGCGCCgGc -3'
miRNA:   3'- gaGAGUgGUGGCAa-CGG----------GGCGCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 32055 0.66 0.656539
Target:  5'- cCUCUgcaGCCGCCGcccGCgCCGCGaCCGg -3'
miRNA:   3'- -GAGAg--UGGUGGCaa-CGgGGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 32552 0.68 0.539297
Target:  5'- cCUUUCGCUcCCGUcucccggGCaCCCGCGgCCGg -3'
miRNA:   3'- -GAGAGUGGuGGCAa------CG-GGGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 32647 0.67 0.607324
Target:  5'- -cCUCGCCGCCGgccccuuCCCCGUuucCCCGu -3'
miRNA:   3'- gaGAGUGGUGGCaac----GGGGCGc--GGGC- -5'
29488 3' -61.6 NC_006151.1 + 34065 0.68 0.520298
Target:  5'- uCUCccggagCGCCcCCGggGUCCCG-GCCCGa -3'
miRNA:   3'- -GAGa-----GUGGuGGCaaCGGGGCgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 34228 0.66 0.684934
Target:  5'- cCUCUCuCCcgacgagGCCGagccgGUCUCGCGCCCc -3'
miRNA:   3'- -GAGAGuGG-------UGGCaa---CGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 35065 0.66 0.646703
Target:  5'- gCUCgcuagCACCACgggggugggucgCGUgccgagcaugcGCCUCGCGCCCGc -3'
miRNA:   3'- -GAGa----GUGGUG------------GCAa----------CGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 35848 0.68 0.558526
Target:  5'- uUCUcCGCCGCCcgcuCUCCGCGCUCGg -3'
miRNA:   3'- gAGA-GUGGUGGcaacGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 36609 0.71 0.372473
Target:  5'- cCUCcccCGCCGCCGggccgGUCUCgGCGCCCGg -3'
miRNA:   3'- -GAGa--GUGGUGGCaa---CGGGG-CGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.