Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29489 | 3' | -51 | NC_006151.1 | + | 44596 | 1.11 | 0.005447 |
Target: 5'- gCGGACGCAUCAGCGUGCCUUUUUCACa -3' miRNA: 3'- -GCCUGCGUAGUCGCACGGAAAAAGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 99332 | 0.73 | 0.792444 |
Target: 5'- aCGGACGCG-CAGCGcGCCgucggcugCACg -3' miRNA: 3'- -GCCUGCGUaGUCGCaCGGaaaaa---GUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 680 | 0.71 | 0.885227 |
Target: 5'- gCGGAuCGCAUCGGCGcgccgaGCCUgccccuuccgUCGCa -3' miRNA: 3'- -GCCU-GCGUAGUCGCa-----CGGAaaa-------AGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 97383 | 0.7 | 0.912735 |
Target: 5'- gCGGGgGCGUCGGCcucguccGUGCCguggaUCGCg -3' miRNA: 3'- -GCCUgCGUAGUCG-------CACGGaaaa-AGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 137875 | 0.7 | 0.919384 |
Target: 5'- aCGGGCGCAgccugCGGC-UGCcCUUcUUCGCc -3' miRNA: 3'- -GCCUGCGUa----GUCGcACG-GAAaAAGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 25337 | 0.7 | 0.919384 |
Target: 5'- gGGACGgc-CGGCGUGCCgcgauaUCACa -3' miRNA: 3'- gCCUGCguaGUCGCACGGaaaa--AGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 112805 | 0.69 | 0.935912 |
Target: 5'- gCGGGCGCGcgucgcugCAGCGcGCCUUcgcCACg -3' miRNA: 3'- -GCCUGCGUa-------GUCGCaCGGAAaaaGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 11890 | 0.69 | 0.935912 |
Target: 5'- uCGGGCcGCAUCgaGGCGcGUCggggUUUUCGCg -3' miRNA: 3'- -GCCUG-CGUAG--UCGCaCGGa---AAAAGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 75112 | 0.69 | 0.935912 |
Target: 5'- cCGGGCGCcagcagcugGUCGGCG-GCCggcggCGCg -3' miRNA: 3'- -GCCUGCG---------UAGUCGCaCGGaaaaaGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 23868 | 0.69 | 0.940901 |
Target: 5'- cCGGugGCGUUGGCGgggGCgagcgggUUCACg -3' miRNA: 3'- -GCCugCGUAGUCGCa--CGgaaa---AAGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 76113 | 0.68 | 0.958302 |
Target: 5'- aGGACGCgcagcaucugGUCGGcCGUGCCg----CGCu -3' miRNA: 3'- gCCUGCG----------UAGUC-GCACGGaaaaaGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 81780 | 0.68 | 0.962033 |
Target: 5'- gGGACGCGcUCGGCGcGCCcg--UCGa -3' miRNA: 3'- gCCUGCGU-AGUCGCaCGGaaaaAGUg -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 112856 | 0.68 | 0.968784 |
Target: 5'- uGGACGUG-CAGCG-GCaCUUUUUCcuGCa -3' miRNA: 3'- gCCUGCGUaGUCGCaCG-GAAAAAG--UG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 101325 | 0.68 | 0.971818 |
Target: 5'- gCGGGUGCA-CGGCGagUGCaaCUUUUUCACg -3' miRNA: 3'- -GCCUGCGUaGUCGC--ACG--GAAAAAGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 27085 | 0.67 | 0.974634 |
Target: 5'- aGGGCGCGgcgCAgggcgcGCGUGUCgcccgUCACg -3' miRNA: 3'- gCCUGCGUa--GU------CGCACGGaaaa-AGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 73386 | 0.67 | 0.974634 |
Target: 5'- gGGGCGCG-CAGCGcgGCCgc---CGCg -3' miRNA: 3'- gCCUGCGUaGUCGCa-CGGaaaaaGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 127526 | 0.67 | 0.97724 |
Target: 5'- cCGuGGCGCGUCAGCGggGCCc------- -3' miRNA: 3'- -GC-CUGCGUAGUCGCa-CGGaaaaagug -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 4166 | 0.67 | 0.97724 |
Target: 5'- gCGGAgCGCGagCAGCGcgGCCg---UCACc -3' miRNA: 3'- -GCCU-GCGUa-GUCGCa-CGGaaaaAGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 64929 | 0.67 | 0.981639 |
Target: 5'- aCGGcguacucGCGCGUCAGCGccugGCCg----CGCu -3' miRNA: 3'- -GCC-------UGCGUAGUCGCa---CGGaaaaaGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 29118 | 0.67 | 0.981852 |
Target: 5'- gGGAcCGCAUC-GCGgGCCgggaagUCGCg -3' miRNA: 3'- gCCU-GCGUAGuCGCaCGGaaaa--AGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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