Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29489 | 3' | -51 | NC_006151.1 | + | 45172 | 0.67 | 0.983876 |
Target: 5'- aCGGACGgGgUGGCGUGCCcgccacCACg -3' miRNA: 3'- -GCCUGCgUaGUCGCACGGaaaaa-GUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 69089 | 0.67 | 0.983876 |
Target: 5'- aCGGccaGC-UCGGCGUGCCgccg-CACc -3' miRNA: 3'- -GCCug-CGuAGUCGCACGGaaaaaGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 59367 | 0.66 | 0.985724 |
Target: 5'- gGGGCGCcgC-GCG-GCCgucgUCGCg -3' miRNA: 3'- gCCUGCGuaGuCGCaCGGaaaaAGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 57289 | 0.66 | 0.985724 |
Target: 5'- aGGGCGUc-CAGCGcgGCCUUggcggCGCg -3' miRNA: 3'- gCCUGCGuaGUCGCa-CGGAAaaa--GUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 94948 | 0.66 | 0.987405 |
Target: 5'- gCGGACGCG-CAGCGcGUCccag-CGCa -3' miRNA: 3'- -GCCUGCGUaGUCGCaCGGaaaaaGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 20978 | 0.66 | 0.98893 |
Target: 5'- uGGGCGCGUCgccgggcacgaggacGGCGcUGCCggcgacgugCACg -3' miRNA: 3'- gCCUGCGUAG---------------UCGC-ACGGaaaaa----GUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 80895 | 0.66 | 0.990307 |
Target: 5'- gGGAagaGCAUCAG-G-GCCUUgacgUCGCc -3' miRNA: 3'- gCCUg--CGUAGUCgCaCGGAAaa--AGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 122487 | 0.66 | 0.990307 |
Target: 5'- gGGACGCGggcgagaCGGCGcGCCggcg-CGCg -3' miRNA: 3'- gCCUGCGUa------GUCGCaCGGaaaaaGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 4293 | 0.66 | 0.991546 |
Target: 5'- aGGACGCA--GGCGUccGCCagc-UCGCg -3' miRNA: 3'- gCCUGCGUagUCGCA--CGGaaaaAGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 60022 | 0.66 | 0.991546 |
Target: 5'- -uGACGCucGUCAGCGUGCag----CGCu -3' miRNA: 3'- gcCUGCG--UAGUCGCACGgaaaaaGUG- -5' |
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29489 | 3' | -51 | NC_006151.1 | + | 64222 | 0.66 | 0.992005 |
Target: 5'- uGGGCGCcUCGGCGUacaggGCCgcgacggcggCGCg -3' miRNA: 3'- gCCUGCGuAGUCGCA-----CGGaaaaa-----GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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