miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29489 3' -51 NC_006151.1 + 80895 0.66 0.990307
Target:  5'- gGGAagaGCAUCAG-G-GCCUUgacgUCGCc -3'
miRNA:   3'- gCCUg--CGUAGUCgCaCGGAAaa--AGUG- -5'
29489 3' -51 NC_006151.1 + 81780 0.68 0.962033
Target:  5'- gGGACGCGcUCGGCGcGCCcg--UCGa -3'
miRNA:   3'- gCCUGCGU-AGUCGCaCGGaaaaAGUg -5'
29489 3' -51 NC_006151.1 + 94948 0.66 0.987405
Target:  5'- gCGGACGCG-CAGCGcGUCccag-CGCa -3'
miRNA:   3'- -GCCUGCGUaGUCGCaCGGaaaaaGUG- -5'
29489 3' -51 NC_006151.1 + 97383 0.7 0.912735
Target:  5'- gCGGGgGCGUCGGCcucguccGUGCCguggaUCGCg -3'
miRNA:   3'- -GCCUgCGUAGUCG-------CACGGaaaa-AGUG- -5'
29489 3' -51 NC_006151.1 + 99332 0.73 0.792444
Target:  5'- aCGGACGCG-CAGCGcGCCgucggcugCACg -3'
miRNA:   3'- -GCCUGCGUaGUCGCaCGGaaaaa---GUG- -5'
29489 3' -51 NC_006151.1 + 101325 0.68 0.971818
Target:  5'- gCGGGUGCA-CGGCGagUGCaaCUUUUUCACg -3'
miRNA:   3'- -GCCUGCGUaGUCGC--ACG--GAAAAAGUG- -5'
29489 3' -51 NC_006151.1 + 112805 0.69 0.935912
Target:  5'- gCGGGCGCGcgucgcugCAGCGcGCCUUcgcCACg -3'
miRNA:   3'- -GCCUGCGUa-------GUCGCaCGGAAaaaGUG- -5'
29489 3' -51 NC_006151.1 + 112856 0.68 0.968784
Target:  5'- uGGACGUG-CAGCG-GCaCUUUUUCcuGCa -3'
miRNA:   3'- gCCUGCGUaGUCGCaCG-GAAAAAG--UG- -5'
29489 3' -51 NC_006151.1 + 122487 0.66 0.990307
Target:  5'- gGGACGCGggcgagaCGGCGcGCCggcg-CGCg -3'
miRNA:   3'- gCCUGCGUa------GUCGCaCGGaaaaaGUG- -5'
29489 3' -51 NC_006151.1 + 127526 0.67 0.97724
Target:  5'- cCGuGGCGCGUCAGCGggGCCc------- -3'
miRNA:   3'- -GC-CUGCGUAGUCGCa-CGGaaaaagug -5'
29489 3' -51 NC_006151.1 + 137875 0.7 0.919384
Target:  5'- aCGGGCGCAgccugCGGC-UGCcCUUcUUCGCc -3'
miRNA:   3'- -GCCUGCGUa----GUCGcACG-GAAaAAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.