miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29489 3' -51 NC_006151.1 + 76113 0.68 0.958302
Target:  5'- aGGACGCgcagcaucugGUCGGcCGUGCCg----CGCu -3'
miRNA:   3'- gCCUGCG----------UAGUC-GCACGGaaaaaGUG- -5'
29489 3' -51 NC_006151.1 + 23868 0.69 0.940901
Target:  5'- cCGGugGCGUUGGCGgggGCgagcgggUUCACg -3'
miRNA:   3'- -GCCugCGUAGUCGCa--CGgaaa---AAGUG- -5'
29489 3' -51 NC_006151.1 + 112805 0.69 0.935912
Target:  5'- gCGGGCGCGcgucgcugCAGCGcGCCUUcgcCACg -3'
miRNA:   3'- -GCCUGCGUa-------GUCGCaCGGAAaaaGUG- -5'
29489 3' -51 NC_006151.1 + 11890 0.69 0.935912
Target:  5'- uCGGGCcGCAUCgaGGCGcGUCggggUUUUCGCg -3'
miRNA:   3'- -GCCUG-CGUAG--UCGCaCGGa---AAAAGUG- -5'
29489 3' -51 NC_006151.1 + 75112 0.69 0.935912
Target:  5'- cCGGGCGCcagcagcugGUCGGCG-GCCggcggCGCg -3'
miRNA:   3'- -GCCUGCG---------UAGUCGCaCGGaaaaaGUG- -5'
29489 3' -51 NC_006151.1 + 25337 0.7 0.919384
Target:  5'- gGGACGgc-CGGCGUGCCgcgauaUCACa -3'
miRNA:   3'- gCCUGCguaGUCGCACGGaaaa--AGUG- -5'
29489 3' -51 NC_006151.1 + 137875 0.7 0.919384
Target:  5'- aCGGGCGCAgccugCGGC-UGCcCUUcUUCGCc -3'
miRNA:   3'- -GCCUGCGUa----GUCGcACG-GAAaAAGUG- -5'
29489 3' -51 NC_006151.1 + 97383 0.7 0.912735
Target:  5'- gCGGGgGCGUCGGCcucguccGUGCCguggaUCGCg -3'
miRNA:   3'- -GCCUgCGUAGUCG-------CACGGaaaa-AGUG- -5'
29489 3' -51 NC_006151.1 + 680 0.71 0.885227
Target:  5'- gCGGAuCGCAUCGGCGcgccgaGCCUgccccuuccgUCGCa -3'
miRNA:   3'- -GCCU-GCGUAGUCGCa-----CGGAaaa-------AGUG- -5'
29489 3' -51 NC_006151.1 + 99332 0.73 0.792444
Target:  5'- aCGGACGCG-CAGCGcGCCgucggcugCACg -3'
miRNA:   3'- -GCCUGCGUaGUCGCaCGGaaaaa---GUG- -5'
29489 3' -51 NC_006151.1 + 44596 1.11 0.005447
Target:  5'- gCGGACGCAUCAGCGUGCCUUUUUCACa -3'
miRNA:   3'- -GCCUGCGUAGUCGCACGGAAAAAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.