miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29489 5' -44.8 NC_006151.1 + 81933 0.66 0.999995
Target:  5'- aGACGAAGGcGGCCACGCcGAgGCg-- -3'
miRNA:   3'- gUUGUUUUU-UCGGUGCGaCUaUGaga -5'
29489 5' -44.8 NC_006151.1 + 61838 0.66 0.999995
Target:  5'- uCGACGGu--GGCCGCcccggggaccCUGAUGCUCg -3'
miRNA:   3'- -GUUGUUuuuUCGGUGc---------GACUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 85111 0.66 0.999995
Target:  5'- uCGGCGcucGAGAGcGCCGCGCUG-UGC-CUg -3'
miRNA:   3'- -GUUGU---UUUUU-CGGUGCGACuAUGaGA- -5'
29489 5' -44.8 NC_006151.1 + 72888 0.66 0.999995
Target:  5'- uCGGCGAu-GAGCCGCGCcagcccccgGCUCUu -3'
miRNA:   3'- -GUUGUUuuUUCGGUGCGacua-----UGAGA- -5'
29489 5' -44.8 NC_006151.1 + 66944 0.66 0.999995
Target:  5'- gGGCAAAGgcggcggcGGGCgcggCACGCUGGaGCUCUu -3'
miRNA:   3'- gUUGUUUU--------UUCG----GUGCGACUaUGAGA- -5'
29489 5' -44.8 NC_006151.1 + 53267 0.66 0.999993
Target:  5'- gCGGCAcAGcuGCCGCGC--GUGCUCg -3'
miRNA:   3'- -GUUGUuUUuuCGGUGCGacUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 74900 0.66 0.99999
Target:  5'- cCAGCcGAugccGGuCCACGCUGA-GCUCg -3'
miRNA:   3'- -GUUGuUUuu--UC-GGUGCGACUaUGAGa -5'
29489 5' -44.8 NC_006151.1 + 86648 0.66 0.99999
Target:  5'- gAGCGAGGAGGCgcuCACGCgcgcGcUGCUCUc -3'
miRNA:   3'- gUUGUUUUUUCG---GUGCGa---CuAUGAGA- -5'
29489 5' -44.8 NC_006151.1 + 95570 0.66 0.99999
Target:  5'- uCGACGccGAGGCCgaggcgcuccagGCGCUcGUACUCg -3'
miRNA:   3'- -GUUGUuuUUUCGG------------UGCGAcUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 121321 0.66 0.99999
Target:  5'- gCGugGAGGcGGCCGCcgaGCUGGUGCg-- -3'
miRNA:   3'- -GUugUUUUuUCGGUG---CGACUAUGaga -5'
29489 5' -44.8 NC_006151.1 + 122379 0.66 0.99999
Target:  5'- uCGACGAGGcgcgccgcGGGCgCGCGCUGGcggcGCUCg -3'
miRNA:   3'- -GUUGUUUU--------UUCG-GUGCGACUa---UGAGa -5'
29489 5' -44.8 NC_006151.1 + 78290 0.66 0.99999
Target:  5'- gAGCugcuacGCCGCGCUGGagggcaUGCUCg -3'
miRNA:   3'- gUUGuuuuuuCGGUGCGACU------AUGAGa -5'
29489 5' -44.8 NC_006151.1 + 117447 0.66 0.99999
Target:  5'- aAGCGc--GGGuCCGCGCUGGcgUACUCg -3'
miRNA:   3'- gUUGUuuuUUC-GGUGCGACU--AUGAGa -5'
29489 5' -44.8 NC_006151.1 + 3902 0.66 0.999986
Target:  5'- gGACGAcGAGGCCGgGCU---GCUCg -3'
miRNA:   3'- gUUGUUuUUUCGGUgCGAcuaUGAGa -5'
29489 5' -44.8 NC_006151.1 + 39043 0.66 0.999985
Target:  5'- gCGGCAGAu-AGCCgaccccgaggacguGCGCguggUGGUGCUCUa -3'
miRNA:   3'- -GUUGUUUuuUCGG--------------UGCG----ACUAUGAGA- -5'
29489 5' -44.8 NC_006151.1 + 132763 0.66 0.999981
Target:  5'- cCAGCAGcgccgggcccucgucGAAGGCCaggucgcugaugagGCGCUGGUACa-- -3'
miRNA:   3'- -GUUGUU---------------UUUUCGG--------------UGCGACUAUGaga -5'
29489 5' -44.8 NC_006151.1 + 86147 0.66 0.999981
Target:  5'- gGACGgcGGGGAGCuCGCGCUGAcGCg-- -3'
miRNA:   3'- gUUGU--UUUUUCG-GUGCGACUaUGaga -5'
29489 5' -44.8 NC_006151.1 + 85760 0.67 0.999973
Target:  5'- --cCGGGcuGGCCGCGCUGGcGCUg- -3'
miRNA:   3'- guuGUUUuuUCGGUGCGACUaUGAga -5'
29489 5' -44.8 NC_006151.1 + 77789 0.67 0.999973
Target:  5'- cCGugAAcGAGGCCugcuucGCGCUGGUGCa-- -3'
miRNA:   3'- -GUugUUuUUUCGG------UGCGACUAUGaga -5'
29489 5' -44.8 NC_006151.1 + 3438 0.67 0.999963
Target:  5'- gCGGCG--GAAGCCgccgucggGCGCggGGUGCUCg -3'
miRNA:   3'- -GUUGUuuUUUCGG--------UGCGa-CUAUGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.