miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29489 5' -44.8 NC_006151.1 + 2473 0.67 0.99995
Target:  5'- cCAGCGGuu-GGCCGCGC-GGUGCcCg -3'
miRNA:   3'- -GUUGUUuuuUCGGUGCGaCUAUGaGa -5'
29489 5' -44.8 NC_006151.1 + 2613 0.71 0.997678
Target:  5'- gCAGCGGGAccgggguccgGGGCCcgGCGCgGGUGCUCa -3'
miRNA:   3'- -GUUGUUUU----------UUCGG--UGCGaCUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 2769 0.67 0.999963
Target:  5'- cCAGCAc---GGCCGCGCgGA-GCUCg -3'
miRNA:   3'- -GUUGUuuuuUCGGUGCGaCUaUGAGa -5'
29489 5' -44.8 NC_006151.1 + 3438 0.67 0.999963
Target:  5'- gCGGCG--GAAGCCgccgucggGCGCggGGUGCUCg -3'
miRNA:   3'- -GUUGUuuUUUCGG--------UGCGa-CUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 3902 0.66 0.999986
Target:  5'- gGACGAcGAGGCCGgGCU---GCUCg -3'
miRNA:   3'- gUUGUUuUUUCGGUgCGAcuaUGAGa -5'
29489 5' -44.8 NC_006151.1 + 7820 0.7 0.998705
Target:  5'- gAGCcGGAcAGCCACGCcuugGAUACUUUu -3'
miRNA:   3'- gUUGuUUUuUCGGUGCGa---CUAUGAGA- -5'
29489 5' -44.8 NC_006151.1 + 14151 0.68 0.999843
Target:  5'- cCGAC-GAGGAGCCGCGCccc-GCUCg -3'
miRNA:   3'- -GUUGuUUUUUCGGUGCGacuaUGAGa -5'
29489 5' -44.8 NC_006151.1 + 39043 0.66 0.999985
Target:  5'- gCGGCAGAu-AGCCgaccccgaggacguGCGCguggUGGUGCUCUa -3'
miRNA:   3'- -GUUGUUUuuUCGG--------------UGCG----ACUAUGAGA- -5'
29489 5' -44.8 NC_006151.1 + 39932 0.73 0.98684
Target:  5'- cCGACGccGAGGCCGCcccGCUGGUGCUg- -3'
miRNA:   3'- -GUUGUuuUUUCGGUG---CGACUAUGAga -5'
29489 5' -44.8 NC_006151.1 + 44630 1.09 0.032687
Target:  5'- cCAACAAAAAAGCCACGCUGAUACUCUu -3'
miRNA:   3'- -GUUGUUUUUUCGGUGCGACUAUGAGA- -5'
29489 5' -44.8 NC_006151.1 + 51440 0.73 0.985004
Target:  5'- uGACGcgGAcGCCGCGCUcGUACUCg -3'
miRNA:   3'- gUUGUuuUUuCGGUGCGAcUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 53267 0.66 0.999993
Target:  5'- gCGGCAcAGcuGCCGCGC--GUGCUCg -3'
miRNA:   3'- -GUUGUuUUuuCGGUGCGacUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 61479 0.67 0.999963
Target:  5'- gCAACGccGAGGCCGugaGCUGGcGCUCc -3'
miRNA:   3'- -GUUGUuuUUUCGGUg--CGACUaUGAGa -5'
29489 5' -44.8 NC_006151.1 + 61838 0.66 0.999995
Target:  5'- uCGACGGu--GGCCGCcccggggaccCUGAUGCUCg -3'
miRNA:   3'- -GUUGUUuuuUCGGUGc---------GACUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 62113 0.69 0.999456
Target:  5'- gCGGCcgu--GGUCGgGCUGAUGCUCg -3'
miRNA:   3'- -GUUGuuuuuUCGGUgCGACUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 66944 0.66 0.999995
Target:  5'- gGGCAAAGgcggcggcGGGCgcggCACGCUGGaGCUCUu -3'
miRNA:   3'- gUUGUUUU--------UUCG----GUGCGACUaUGAGA- -5'
29489 5' -44.8 NC_006151.1 + 69133 0.68 0.99988
Target:  5'- -cGCGGGcAGGgCGCGCgGGUGCUCg -3'
miRNA:   3'- guUGUUUuUUCgGUGCGaCUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 72888 0.66 0.999995
Target:  5'- uCGGCGAu-GAGCCGCGCcagcccccgGCUCUu -3'
miRNA:   3'- -GUUGUUuuUUCGGUGCGacua-----UGAGA- -5'
29489 5' -44.8 NC_006151.1 + 74900 0.66 0.99999
Target:  5'- cCAGCcGAugccGGuCCACGCUGA-GCUCg -3'
miRNA:   3'- -GUUGuUUuu--UC-GGUGCGACUaUGAGa -5'
29489 5' -44.8 NC_006151.1 + 77789 0.67 0.999973
Target:  5'- cCGugAAcGAGGCCugcuucGCGCUGGUGCa-- -3'
miRNA:   3'- -GUugUUuUUUCGG------UGCGACUAUGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.