miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29489 5' -44.8 NC_006151.1 + 137305 0.68 0.99988
Target:  5'- -cGCGGGuuccGCCGCGC-GGUGCUCg -3'
miRNA:   3'- guUGUUUuuu-CGGUGCGaCUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 132763 0.66 0.999981
Target:  5'- cCAGCAGcgccgggcccucgucGAAGGCCaggucgcugaugagGCGCUGGUACa-- -3'
miRNA:   3'- -GUUGUU---------------UUUUCGG--------------UGCGACUAUGaga -5'
29489 5' -44.8 NC_006151.1 + 122379 0.66 0.99999
Target:  5'- uCGACGAGGcgcgccgcGGGCgCGCGCUGGcggcGCUCg -3'
miRNA:   3'- -GUUGUUUU--------UUCG-GUGCGACUa---UGAGa -5'
29489 5' -44.8 NC_006151.1 + 121321 0.66 0.99999
Target:  5'- gCGugGAGGcGGCCGCcgaGCUGGUGCg-- -3'
miRNA:   3'- -GUugUUUUuUCGGUG---CGACUAUGaga -5'
29489 5' -44.8 NC_006151.1 + 118989 0.7 0.998947
Target:  5'- aCGACGAGGAGccccCCGCGCUGGacgacuggcccgUGCUCUc -3'
miRNA:   3'- -GUUGUUUUUUc---GGUGCGACU------------AUGAGA- -5'
29489 5' -44.8 NC_006151.1 + 117447 0.66 0.99999
Target:  5'- aAGCGc--GGGuCCGCGCUGGcgUACUCg -3'
miRNA:   3'- gUUGUuuuUUC-GGUGCGACU--AUGAGa -5'
29489 5' -44.8 NC_006151.1 + 115433 0.7 0.998947
Target:  5'- gGGCgGAAGAGGUCGCGCgUGAUGCg-- -3'
miRNA:   3'- gUUG-UUUUUUCGGUGCG-ACUAUGaga -5'
29489 5' -44.8 NC_006151.1 + 115164 0.68 0.999796
Target:  5'- aGGCGGcGAAGCCGCGCggcagggGGcGCUCc -3'
miRNA:   3'- gUUGUUuUUUCGGUGCGa------CUaUGAGa -5'
29489 5' -44.8 NC_006151.1 + 114777 0.69 0.999569
Target:  5'- gGGCcuuGAAGGUgACGCUGAgcgUGCUCa -3'
miRNA:   3'- gUUGuu-UUUUCGgUGCGACU---AUGAGa -5'
29489 5' -44.8 NC_006151.1 + 105017 0.71 0.995978
Target:  5'- -cGCGGAGGAGCUggugacgcaggcgGCGCUGcUGCUCg -3'
miRNA:   3'- guUGUUUUUUCGG-------------UGCGACuAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 103405 0.7 0.998807
Target:  5'- gGGCGAcuuuGCCACGCUGGgcccggcgguggaccUGCUCg -3'
miRNA:   3'- gUUGUUuuuuCGGUGCGACU---------------AUGAGa -5'
29489 5' -44.8 NC_006151.1 + 103317 0.67 0.99995
Target:  5'- gCGACGccGAGcuGCgCACGCUGGUGCa-- -3'
miRNA:   3'- -GUUGU--UUUuuCG-GUGCGACUAUGaga -5'
29489 5' -44.8 NC_006151.1 + 102825 0.74 0.978317
Target:  5'- aCAGCGccAAGGCCAUGCUGAUGgaCc -3'
miRNA:   3'- -GUUGUuuUUUCGGUGCGACUAUgaGa -5'
29489 5' -44.8 NC_006151.1 + 99469 0.7 0.999149
Target:  5'- gGACGuGAcGGCgGCGCUGggGCUCc -3'
miRNA:   3'- gUUGUuUUuUCGgUGCGACuaUGAGa -5'
29489 5' -44.8 NC_006151.1 + 98961 0.71 0.996046
Target:  5'- cCGugGAcGAGGCgGCGCUGGUGCcCg -3'
miRNA:   3'- -GUugUUuUUUCGgUGCGACUAUGaGa -5'
29489 5' -44.8 NC_006151.1 + 95570 0.66 0.99999
Target:  5'- uCGACGccGAGGCCgaggcgcuccagGCGCUcGUACUCg -3'
miRNA:   3'- -GUUGUuuUUUCGG------------UGCGAcUAUGAGa -5'
29489 5' -44.8 NC_006151.1 + 86648 0.66 0.99999
Target:  5'- gAGCGAGGAGGCgcuCACGCgcgcGcUGCUCUc -3'
miRNA:   3'- gUUGUUUUUUCG---GUGCGa---CuAUGAGA- -5'
29489 5' -44.8 NC_006151.1 + 86147 0.66 0.999981
Target:  5'- gGACGgcGGGGAGCuCGCGCUGAcGCg-- -3'
miRNA:   3'- gUUGU--UUUUUCG-GUGCGACUaUGaga -5'
29489 5' -44.8 NC_006151.1 + 85760 0.67 0.999973
Target:  5'- --cCGGGcuGGCCGCGCUGGcGCUg- -3'
miRNA:   3'- guuGUUUuuUCGGUGCGACUaUGAga -5'
29489 5' -44.8 NC_006151.1 + 85111 0.66 0.999995
Target:  5'- uCGGCGcucGAGAGcGCCGCGCUG-UGC-CUg -3'
miRNA:   3'- -GUUGU---UUUUU-CGGUGCGACuAUGaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.