Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29489 | 5' | -44.8 | NC_006151.1 | + | 78290 | 0.66 | 0.99999 |
Target: 5'- gAGCugcuacGCCGCGCUGGagggcaUGCUCg -3' miRNA: 3'- gUUGuuuuuuCGGUGCGACU------AUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 81933 | 0.66 | 0.999995 |
Target: 5'- aGACGAAGGcGGCCACGCcGAgGCg-- -3' miRNA: 3'- gUUGUUUUU-UCGGUGCGaCUaUGaga -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 83466 | 0.67 | 0.999932 |
Target: 5'- -cACGAAGGccGCCGCGCUGAUG-UCc -3' miRNA: 3'- guUGUUUUUu-CGGUGCGACUAUgAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 85111 | 0.66 | 0.999995 |
Target: 5'- uCGGCGcucGAGAGcGCCGCGCUG-UGC-CUg -3' miRNA: 3'- -GUUGU---UUUUU-CGGUGCGACuAUGaGA- -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 85760 | 0.67 | 0.999973 |
Target: 5'- --cCGGGcuGGCCGCGCUGGcGCUg- -3' miRNA: 3'- guuGUUUuuUCGGUGCGACUaUGAga -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 86147 | 0.66 | 0.999981 |
Target: 5'- gGACGgcGGGGAGCuCGCGCUGAcGCg-- -3' miRNA: 3'- gUUGU--UUUUUCG-GUGCGACUaUGaga -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 86648 | 0.66 | 0.99999 |
Target: 5'- gAGCGAGGAGGCgcuCACGCgcgcGcUGCUCUc -3' miRNA: 3'- gUUGUUUUUUCG---GUGCGa---CuAUGAGA- -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 95570 | 0.66 | 0.99999 |
Target: 5'- uCGACGccGAGGCCgaggcgcuccagGCGCUcGUACUCg -3' miRNA: 3'- -GUUGUuuUUUCGG------------UGCGAcUAUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 98961 | 0.71 | 0.996046 |
Target: 5'- cCGugGAcGAGGCgGCGCUGGUGCcCg -3' miRNA: 3'- -GUugUUuUUUCGgUGCGACUAUGaGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 99469 | 0.7 | 0.999149 |
Target: 5'- gGACGuGAcGGCgGCGCUGggGCUCc -3' miRNA: 3'- gUUGUuUUuUCGgUGCGACuaUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 102825 | 0.74 | 0.978317 |
Target: 5'- aCAGCGccAAGGCCAUGCUGAUGgaCc -3' miRNA: 3'- -GUUGUuuUUUCGGUGCGACUAUgaGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 103317 | 0.67 | 0.99995 |
Target: 5'- gCGACGccGAGcuGCgCACGCUGGUGCa-- -3' miRNA: 3'- -GUUGU--UUUuuCG-GUGCGACUAUGaga -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 103405 | 0.7 | 0.998807 |
Target: 5'- gGGCGAcuuuGCCACGCUGGgcccggcgguggaccUGCUCg -3' miRNA: 3'- gUUGUUuuuuCGGUGCGACU---------------AUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 105017 | 0.71 | 0.995978 |
Target: 5'- -cGCGGAGGAGCUggugacgcaggcgGCGCUGcUGCUCg -3' miRNA: 3'- guUGUUUUUUCGG-------------UGCGACuAUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 114777 | 0.69 | 0.999569 |
Target: 5'- gGGCcuuGAAGGUgACGCUGAgcgUGCUCa -3' miRNA: 3'- gUUGuu-UUUUCGgUGCGACU---AUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 115164 | 0.68 | 0.999796 |
Target: 5'- aGGCGGcGAAGCCGCGCggcagggGGcGCUCc -3' miRNA: 3'- gUUGUUuUUUCGGUGCGa------CUaUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 115433 | 0.7 | 0.998947 |
Target: 5'- gGGCgGAAGAGGUCGCGCgUGAUGCg-- -3' miRNA: 3'- gUUG-UUUUUUCGGUGCG-ACUAUGaga -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 117447 | 0.66 | 0.99999 |
Target: 5'- aAGCGc--GGGuCCGCGCUGGcgUACUCg -3' miRNA: 3'- gUUGUuuuUUC-GGUGCGACU--AUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 118989 | 0.7 | 0.998947 |
Target: 5'- aCGACGAGGAGccccCCGCGCUGGacgacuggcccgUGCUCUc -3' miRNA: 3'- -GUUGUUUUUUc---GGUGCGACU------------AUGAGA- -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 121321 | 0.66 | 0.99999 |
Target: 5'- gCGugGAGGcGGCCGCcgaGCUGGUGCg-- -3' miRNA: 3'- -GUugUUUUuUCGGUG---CGACUAUGaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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