Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29489 | 5' | -44.8 | NC_006151.1 | + | 2769 | 0.67 | 0.999963 |
Target: 5'- cCAGCAc---GGCCGCGCgGA-GCUCg -3' miRNA: 3'- -GUUGUuuuuUCGGUGCGaCUaUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 61479 | 0.67 | 0.999963 |
Target: 5'- gCAACGccGAGGCCGugaGCUGGcGCUCc -3' miRNA: 3'- -GUUGUuuUUUCGGUg--CGACUaUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 3438 | 0.67 | 0.999963 |
Target: 5'- gCGGCG--GAAGCCgccgucggGCGCggGGUGCUCg -3' miRNA: 3'- -GUUGUuuUUUCGG--------UGCGa-CUAUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 77789 | 0.67 | 0.999973 |
Target: 5'- cCGugAAcGAGGCCugcuucGCGCUGGUGCa-- -3' miRNA: 3'- -GUugUUuUUUCGG------UGCGACUAUGaga -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 85760 | 0.67 | 0.999973 |
Target: 5'- --cCGGGcuGGCCGCGCUGGcGCUg- -3' miRNA: 3'- guuGUUUuuUCGGUGCGACUaUGAga -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 115164 | 0.68 | 0.999796 |
Target: 5'- aGGCGGcGAAGCCGCGCggcagggGGcGCUCc -3' miRNA: 3'- gUUGUUuUUUCGGUGCGa------CUaUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 14151 | 0.68 | 0.999843 |
Target: 5'- cCGAC-GAGGAGCCGCGCccc-GCUCg -3' miRNA: 3'- -GUUGuUUUUUCGGUGCGacuaUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 69133 | 0.68 | 0.99988 |
Target: 5'- -cGCGGGcAGGgCGCGCgGGUGCUCg -3' miRNA: 3'- guUGUUUuUUCgGUGCGaCUAUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 137305 | 0.68 | 0.99988 |
Target: 5'- -cGCGGGuuccGCCGCGC-GGUGCUCg -3' miRNA: 3'- guUGUUUuuu-CGGUGCGaCUAUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 114777 | 0.69 | 0.999569 |
Target: 5'- gGGCcuuGAAGGUgACGCUGAgcgUGCUCa -3' miRNA: 3'- gUUGuu-UUUUCGgUGCGACU---AUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 62113 | 0.69 | 0.999456 |
Target: 5'- gCGGCcgu--GGUCGgGCUGAUGCUCg -3' miRNA: 3'- -GUUGuuuuuUCGGUgCGACUAUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 7820 | 0.7 | 0.998705 |
Target: 5'- gAGCcGGAcAGCCACGCcuugGAUACUUUu -3' miRNA: 3'- gUUGuUUUuUCGGUGCGa---CUAUGAGA- -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 103405 | 0.7 | 0.998807 |
Target: 5'- gGGCGAcuuuGCCACGCUGGgcccggcgguggaccUGCUCg -3' miRNA: 3'- gUUGUUuuuuCGGUGCGACU---------------AUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 115433 | 0.7 | 0.998947 |
Target: 5'- gGGCgGAAGAGGUCGCGCgUGAUGCg-- -3' miRNA: 3'- gUUG-UUUUUUCGGUGCG-ACUAUGaga -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 118989 | 0.7 | 0.998947 |
Target: 5'- aCGACGAGGAGccccCCGCGCUGGacgacuggcccgUGCUCUc -3' miRNA: 3'- -GUUGUUUUUUc---GGUGCGACU------------AUGAGA- -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 99469 | 0.7 | 0.999149 |
Target: 5'- gGACGuGAcGGCgGCGCUGggGCUCc -3' miRNA: 3'- gUUGUuUUuUCGgUGCGACuaUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 2613 | 0.71 | 0.997678 |
Target: 5'- gCAGCGGGAccgggguccgGGGCCcgGCGCgGGUGCUCa -3' miRNA: 3'- -GUUGUUUU----------UUCGG--UGCGaCUAUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 98961 | 0.71 | 0.996046 |
Target: 5'- cCGugGAcGAGGCgGCGCUGGUGCcCg -3' miRNA: 3'- -GUugUUuUUUCGgUGCGACUAUGaGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 105017 | 0.71 | 0.995978 |
Target: 5'- -cGCGGAGGAGCUggugacgcaggcgGCGCUGcUGCUCg -3' miRNA: 3'- guUGUUUUUUCGG-------------UGCGACuAUGAGa -5' |
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29489 | 5' | -44.8 | NC_006151.1 | + | 51440 | 0.73 | 0.985004 |
Target: 5'- uGACGcgGAcGCCGCGCUcGUACUCg -3' miRNA: 3'- gUUGUuuUUuCGGUGCGAcUAUGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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