miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 124021 0.66 0.66773
Target:  5'- cCCCggCCCC-UCGGaggCCCCCGacGGCg -3'
miRNA:   3'- -GGGuaGGGGuAGUUg--GGGGGCccCCG- -5'
29490 3' -62.2 NC_006151.1 + 20421 0.66 0.66773
Target:  5'- cCCCcUCCUCGUCcuCCUCCUcuucgucggaGcGGGGCu -3'
miRNA:   3'- -GGGuAGGGGUAGuuGGGGGG----------C-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 64523 0.66 0.66773
Target:  5'- gCCAaaggCCgCcgCGGCCgCgUCGGGGGCg -3'
miRNA:   3'- gGGUa---GGgGuaGUUGG-GgGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 10271 0.66 0.66773
Target:  5'- gUCC-UCCUCGcCGGCUCCCaggCGGcGGGCa -3'
miRNA:   3'- -GGGuAGGGGUaGUUGGGGG---GCC-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 107324 0.66 0.666761
Target:  5'- aCCCGUUCCCAUaCGccgugucggcgacGCCCaCCCGGcccGCg -3'
miRNA:   3'- -GGGUAGGGGUA-GU-------------UGGG-GGGCCcc-CG- -5'
29490 3' -62.2 NC_006151.1 + 32740 0.66 0.649279
Target:  5'- cCCCGUCCCCucuUCcuuCCCcacacgccccgcucuCCCacgccgcggccgcgGGGGGCc -3'
miRNA:   3'- -GGGUAGGGGu--AGuu-GGG---------------GGG--------------CCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 41427 0.66 0.652196
Target:  5'- uUCCGUCCCCAcuccCAGCCUCCCccgcugccaccgauuGGccGGCg -3'
miRNA:   3'- -GGGUAGGGGUa---GUUGGGGGG---------------CCc-CCG- -5'
29490 3' -62.2 NC_006151.1 + 141447 0.66 0.657056
Target:  5'- -aCGUCCCCGUaggagggCggUCUggagCCGGGGGCg -3'
miRNA:   3'- ggGUAGGGGUA-------GuuGGGg---GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 48650 0.66 0.658027
Target:  5'- gCCG-CUgCAgcagCAGCCCCCgCcGGGGCa -3'
miRNA:   3'- gGGUaGGgGUa---GUUGGGGG-GcCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 13746 0.66 0.658027
Target:  5'- gCCCGUCCCgCGggcCGgaccGCCCCCuuccCGGGacuuGGCa -3'
miRNA:   3'- -GGGUAGGG-GUa--GU----UGGGGG----GCCC----CCG- -5'
29490 3' -62.2 NC_006151.1 + 36310 0.66 0.658027
Target:  5'- cCUCGUCCUCG--GGCCCcgguCCCGGGccGGCu -3'
miRNA:   3'- -GGGUAGGGGUagUUGGG----GGGCCC--CCG- -5'
29490 3' -62.2 NC_006151.1 + 91120 0.67 0.599663
Target:  5'- gCCCuUCgCCAcggcggcgagcUUGGCCaCCUGGGGGCg -3'
miRNA:   3'- -GGGuAGgGGU-----------AGUUGGgGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 114668 0.67 0.606459
Target:  5'- gCCCGUgagcgccgcgaaggCCUCGugcUCGAagggcgcgUCCCCGGGGGCg -3'
miRNA:   3'- -GGGUA--------------GGGGU---AGUUg-------GGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 36454 0.67 0.609374
Target:  5'- uCCCggCCCCucggCAGCCCCgCGGagauGGUc -3'
miRNA:   3'- -GGGuaGGGGua--GUUGGGGgGCCc---CCG- -5'
29490 3' -62.2 NC_006151.1 + 5421 0.67 0.609374
Target:  5'- gUCCGUCCUCGUC--CUUCUCGGGGccGCg -3'
miRNA:   3'- -GGGUAGGGGUAGuuGGGGGGCCCC--CG- -5'
29490 3' -62.2 NC_006151.1 + 23225 0.67 0.609374
Target:  5'- cUCC-UCCUCgGUCAccuccuCgCCCUCGGGGGCc -3'
miRNA:   3'- -GGGuAGGGG-UAGUu-----G-GGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 36595 0.67 0.6191
Target:  5'- gCCCGcuUCCCCAgcc-UCCCCCGccgccGGGCc -3'
miRNA:   3'- -GGGU--AGGGGUaguuGGGGGGCc----CCCG- -5'
29490 3' -62.2 NC_006151.1 + 32560 0.67 0.6191
Target:  5'- uCCCGUCuCCCG--GGCaCCCgCGGccGGGCg -3'
miRNA:   3'- -GGGUAG-GGGUagUUG-GGGgGCC--CCCG- -5'
29490 3' -62.2 NC_006151.1 + 39997 0.67 0.620074
Target:  5'- gCCGUgcucugggacuuugcCCCCuUCGagaccagcguccgcGCCgCCgCCGGGGGCg -3'
miRNA:   3'- gGGUA---------------GGGGuAGU--------------UGG-GG-GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 34061 0.67 0.599663
Target:  5'- uUCGUCuCCCGg-AGCgCCCCCGGGGu- -3'
miRNA:   3'- gGGUAG-GGGUagUUG-GGGGGCCCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.