miRNA display CGI


Results 21 - 40 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 14028 0.7 0.425135
Target:  5'- gCCCGUCggCCCG---GCCCCCuCGacGGGGCg -3'
miRNA:   3'- -GGGUAG--GGGUaguUGGGGG-GC--CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 14449 0.66 0.627862
Target:  5'- cCCCcUCCCCu----CCCCCgGGuuggguuGGGCg -3'
miRNA:   3'- -GGGuAGGGGuaguuGGGGGgCC-------CCCG- -5'
29490 3' -62.2 NC_006151.1 + 14608 0.71 0.384296
Target:  5'- aUCCAUCCaauCCAUcCAGCCaCCCCcacccgucGGGGCg -3'
miRNA:   3'- -GGGUAGG---GGUA-GUUGG-GGGGc-------CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 14881 0.77 0.162533
Target:  5'- cCCCGccguucUCgCCCGUCGACCCgCCCGGGccccGGCc -3'
miRNA:   3'- -GGGU------AG-GGGUAGUUGGG-GGGCCC----CCG- -5'
29490 3' -62.2 NC_006151.1 + 14947 0.76 0.17472
Target:  5'- cCCCGUCCCCcgccUCGACCCCCagccccccaagCGcGGGCg -3'
miRNA:   3'- -GGGUAGGGGu---AGUUGGGGG-----------GCcCCCG- -5'
29490 3' -62.2 NC_006151.1 + 15225 0.72 0.317628
Target:  5'- gCCAgcgCCCC-UCGGCCCCCUGcuGGCa -3'
miRNA:   3'- gGGUa--GGGGuAGUUGGGGGGCccCCG- -5'
29490 3' -62.2 NC_006151.1 + 17800 0.67 0.599663
Target:  5'- gCCC--CCCCG--GACCCCCCcuccugggcgcgGcGGGGCg -3'
miRNA:   3'- -GGGuaGGGGUagUUGGGGGG------------C-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 20421 0.66 0.66773
Target:  5'- cCCCcUCCUCGUCcuCCUCCUcuucgucggaGcGGGGCu -3'
miRNA:   3'- -GGGuAGGGGUAGuuGGGGGG----------C-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 20601 0.67 0.574531
Target:  5'- aCUCGUCCgCGgacgacggCGugggguggugggggcGCCCCCUGGGcGGCa -3'
miRNA:   3'- -GGGUAGGgGUa-------GU---------------UGGGGGGCCC-CCG- -5'
29490 3' -62.2 NC_006151.1 + 23131 0.68 0.561096
Target:  5'- gCCCcUCCuCCGUCGccggGCCCUCgGcGGGaGCg -3'
miRNA:   3'- -GGGuAGG-GGUAGU----UGGGGGgC-CCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 23225 0.67 0.609374
Target:  5'- cUCC-UCCUCgGUCAccuccuCgCCCUCGGGGGCc -3'
miRNA:   3'- -GGGuAGGGG-UAGUu-----G-GGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 26149 0.68 0.52324
Target:  5'- cUCCAcCCCCAUCucccuUCCCCaCGaGGGCc -3'
miRNA:   3'- -GGGUaGGGGUAGuu---GGGGG-GCcCCCG- -5'
29490 3' -62.2 NC_006151.1 + 26575 0.71 0.376446
Target:  5'- gCCC-UCUCCGUCcgAGCCguCCUCGGGGGg -3'
miRNA:   3'- -GGGuAGGGGUAG--UUGG--GGGGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 27795 0.71 0.376446
Target:  5'- gCCCA-CCCgccCAACCCaaCCCGGGGGa -3'
miRNA:   3'- -GGGUaGGGguaGUUGGG--GGGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 27992 0.69 0.450846
Target:  5'- gCCCAcUCCCgGcCcACCCCgaCCGGGGGa -3'
miRNA:   3'- -GGGU-AGGGgUaGuUGGGG--GGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 28152 0.69 0.459604
Target:  5'- uCCCGgucgaUCCCCGUCGGCgUCgUuGGGGCg -3'
miRNA:   3'- -GGGU-----AGGGGUAGUUGgGGgGcCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 28293 0.76 0.182854
Target:  5'- gCCCGgcucCCCCAUUGGCCggcgcguCCCCGGGGcGCc -3'
miRNA:   3'- -GGGUa---GGGGUAGUUGG-------GGGGCCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 28571 0.68 0.541112
Target:  5'- uCCCGggagCCCgCAUUGGCCggcgcguCCCCGGaGGCg -3'
miRNA:   3'- -GGGUa---GGG-GUAGUUGG-------GGGGCCcCCG- -5'
29490 3' -62.2 NC_006151.1 + 28853 0.72 0.310103
Target:  5'- gCCCGgcucCCCCAUUGGCCggcgcguCCCCGGaGGCg -3'
miRNA:   3'- -GGGUa---GGGGUAGUUGG-------GGGGCCcCCG- -5'
29490 3' -62.2 NC_006151.1 + 30572 0.69 0.477387
Target:  5'- gCCGUCCCg--CGGCCCCgUCGGGcGCa -3'
miRNA:   3'- gGGUAGGGguaGUUGGGG-GGCCCcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.