miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 1 0.8 0.104295
Target:  5'- CCCAcCCCCc---GCUCCCCGGGGGCc -3'
miRNA:   3'- GGGUaGGGGuaguUGGGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 2200 0.7 0.425135
Target:  5'- cCCCgcgggccgguggGUCUCCA-CGGCgCCCCCGGcGGCg -3'
miRNA:   3'- -GGG------------UAGGGGUaGUUG-GGGGGCCcCCG- -5'
29490 3' -62.2 NC_006151.1 + 3672 0.74 0.2542
Target:  5'- gCCGUCCCCGgggCGGCgggCCCCGGGcGCg -3'
miRNA:   3'- gGGUAGGGGUa--GUUGg--GGGGCCCcCG- -5'
29490 3' -62.2 NC_006151.1 + 4829 0.69 0.459604
Target:  5'- gUCGUCCUCGUCccagAGCCCCUCGcGGGaGUc -3'
miRNA:   3'- gGGUAGGGGUAG----UUGGGGGGC-CCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 5421 0.67 0.609374
Target:  5'- gUCCGUCCUCGUC--CUUCUCGGGGccGCg -3'
miRNA:   3'- -GGGUAGGGGUAGuuGGGGGGCCCC--CG- -5'
29490 3' -62.2 NC_006151.1 + 8170 0.68 0.504677
Target:  5'- gCCCAaaauggaCCUCG--GGCCgggaCCCCGGGGGCg -3'
miRNA:   3'- -GGGUa------GGGGUagUUGG----GGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 8305 0.75 0.21627
Target:  5'- gCCgCGUCCCgCccCGAgCCCCCGGGGcGCg -3'
miRNA:   3'- -GG-GUAGGG-GuaGUUgGGGGGCCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 9022 0.7 0.416761
Target:  5'- cCCCGgaCCCCcUCccGCCCgCCGGGGcGCc -3'
miRNA:   3'- -GGGUa-GGGGuAGu-UGGGgGGCCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 9415 0.72 0.324588
Target:  5'- cCCCAUCCCCGcCGGCCCCCCu----- -3'
miRNA:   3'- -GGGUAGGGGUaGUUGGGGGGcccccg -5'
29490 3' -62.2 NC_006151.1 + 9468 0.72 0.33166
Target:  5'- uCCgCGUCCgCuUCGGCCCCCCGcGGccgcGGCg -3'
miRNA:   3'- -GG-GUAGGgGuAGUUGGGGGGC-CC----CCG- -5'
29490 3' -62.2 NC_006151.1 + 10271 0.66 0.66773
Target:  5'- gUCC-UCCUCGcCGGCUCCCaggCGGcGGGCa -3'
miRNA:   3'- -GGGuAGGGGUaGUUGGGGG---GCC-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 10305 0.66 0.648306
Target:  5'- cCCgCGUCCCCggcGUCAucacgcgggACCCCCCGGu--- -3'
miRNA:   3'- -GG-GUAGGGG---UAGU---------UGGGGGGCCcccg -5'
29490 3' -62.2 NC_006151.1 + 10856 0.74 0.260045
Target:  5'- cCCCuUCCCCucgcccCGGCCCCCCGGcuuGGUg -3'
miRNA:   3'- -GGGuAGGGGua----GUUGGGGGGCCc--CCG- -5'
29490 3' -62.2 NC_006151.1 + 11286 0.75 0.221376
Target:  5'- cCCCGUCCCCGUCc-CCCgCCCGcucucccGGGCc -3'
miRNA:   3'- -GGGUAGGGGUAGuuGGG-GGGCc------CCCG- -5'
29490 3' -62.2 NC_006151.1 + 11451 0.69 0.459604
Target:  5'- uCCCG-CCCg--CGugCCCCCGGGGcCa -3'
miRNA:   3'- -GGGUaGGGguaGUugGGGGGCCCCcG- -5'
29490 3' -62.2 NC_006151.1 + 11562 0.74 0.259456
Target:  5'- aCCCggCCCCGaCAcccccccGCCCgCCGGGGGa -3'
miRNA:   3'- -GGGuaGGGGUaGU-------UGGGgGGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 12822 0.68 0.542058
Target:  5'- cCCCucUCCCCG-CcGCCCCCCGc-GGCc -3'
miRNA:   3'- -GGGu-AGGGGUaGuUGGGGGGCccCCG- -5'
29490 3' -62.2 NC_006151.1 + 12977 0.71 0.368705
Target:  5'- uCCCA-CCCCAcccucccgacUC-ACCCguCCCGGGGGa -3'
miRNA:   3'- -GGGUaGGGGU----------AGuUGGG--GGGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 13746 0.66 0.658027
Target:  5'- gCCCGUCCCgCGggcCGgaccGCCCCCuuccCGGGacuuGGCa -3'
miRNA:   3'- -GGGUAGGG-GUa--GU----UGGGGG----GCCC----CCG- -5'
29490 3' -62.2 NC_006151.1 + 13888 0.67 0.578384
Target:  5'- cCCCAcgugcCCCCAUUGGCgauuuaucgaucgcuUuccgaagggaucgaaCCCCGGGGGCg -3'
miRNA:   3'- -GGGUa----GGGGUAGUUG---------------G---------------GGGGCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.