miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 44108 1.13 0.000497
Target:  5'- gCCCAUCCCCAUCAACCCCCCGGGGGCg -3'
miRNA:   3'- -GGGUAGGGGUAGUUGGGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 33877 0.86 0.036524
Target:  5'- cCCCAUCCCgGac--CCCCCCGGGGGCg -3'
miRNA:   3'- -GGGUAGGGgUaguuGGGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 134404 0.82 0.067822
Target:  5'- -aCAUCCCCugcccgCGcgagcuggugcuGCCCCCCGGGGGCg -3'
miRNA:   3'- ggGUAGGGGua----GU------------UGGGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 129189 0.8 0.094328
Target:  5'- gCCAcggCCgCCGUCAgcACCuCCCCGGGGGCc -3'
miRNA:   3'- gGGUa--GG-GGUAGU--UGG-GGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 1 0.8 0.104295
Target:  5'- CCCAcCCCCc---GCUCCCCGGGGGCc -3'
miRNA:   3'- GGGUaGGGGuaguUGGGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 56475 0.79 0.112412
Target:  5'- cCCCAUCgCCCAgcgccugcugUCGGCCCCCCGGGccccGCc -3'
miRNA:   3'- -GGGUAG-GGGU----------AGUUGGGGGGCCCc---CG- -5'
29490 3' -62.2 NC_006151.1 + 135058 0.79 0.112412
Target:  5'- cCCCcUCCUCGUCuuCCCCCgccuccucgggCGGGGGCg -3'
miRNA:   3'- -GGGuAGGGGUAGuuGGGGG-----------GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 136339 0.79 0.124155
Target:  5'- cCCCAaCCCCAgCGGCCuggaCCCCGcGGGGCu -3'
miRNA:   3'- -GGGUaGGGGUaGUUGG----GGGGC-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 143234 0.78 0.127264
Target:  5'- cCCCcUCCCCAUUcACCCCaauggaaaacgCGGGGGCg -3'
miRNA:   3'- -GGGuAGGGGUAGuUGGGGg----------GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 133282 0.77 0.158643
Target:  5'- gCCGgcggcggCCCaCGUCGAgguuCUCCCCGGGGGCg -3'
miRNA:   3'- gGGUa------GGG-GUAGUU----GGGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 14881 0.77 0.162533
Target:  5'- cCCCGccguucUCgCCCGUCGACCCgCCCGGGccccGGCc -3'
miRNA:   3'- -GGGU------AG-GGGUAGUUGGG-GGGCCC----CCG- -5'
29490 3' -62.2 NC_006151.1 + 14947 0.76 0.17472
Target:  5'- cCCCGUCCCCcgccUCGACCCCCagccccccaagCGcGGGCg -3'
miRNA:   3'- -GGGUAGGGGu---AGUUGGGGG-----------GCcCCCG- -5'
29490 3' -62.2 NC_006151.1 + 65764 0.76 0.17896
Target:  5'- cCCCGUCCCCGUC-GCCgCCgGcGGcGGCg -3'
miRNA:   3'- -GGGUAGGGGUAGuUGGgGGgC-CC-CCG- -5'
29490 3' -62.2 NC_006151.1 + 28293 0.76 0.182854
Target:  5'- gCCCGgcucCCCCAUUGGCCggcgcguCCCCGGGGcGCc -3'
miRNA:   3'- -GGGUa---GGGGUAGUUGG-------GGGGCCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 84184 0.76 0.183291
Target:  5'- uCCUcgCCgCCGcCGugCCCCCGGGcGGCg -3'
miRNA:   3'- -GGGuaGG-GGUaGUugGGGGGCCC-CCG- -5'
29490 3' -62.2 NC_006151.1 + 142724 0.75 0.201553
Target:  5'- cCCCGggcCCCCA-CAACUCUcuggCCGGGGGCc -3'
miRNA:   3'- -GGGUa--GGGGUaGUUGGGG----GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 44000 0.75 0.201553
Target:  5'- aCCCAccccCCCCcgCAGCCCCCgccccgCGGGGaGCc -3'
miRNA:   3'- -GGGUa---GGGGuaGUUGGGGG------GCCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 8305 0.75 0.21627
Target:  5'- gCCgCGUCCCgCccCGAgCCCCCGGGGcGCg -3'
miRNA:   3'- -GG-GUAGGG-GuaGUUgGGGGGCCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 42743 0.75 0.220347
Target:  5'- cCCCAcCCCCGUgCAucccucuccccuCUCCCCGGGGGg -3'
miRNA:   3'- -GGGUaGGGGUA-GUu-----------GGGGGGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 11286 0.75 0.221376
Target:  5'- cCCCGUCCCCGUCc-CCCgCCCGcucucccGGGCc -3'
miRNA:   3'- -GGGUAGGGGUAGuuGGG-GGGCc------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.