miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 143234 0.78 0.127264
Target:  5'- cCCCcUCCCCAUUcACCCCaauggaaaacgCGGGGGCg -3'
miRNA:   3'- -GGGuAGGGGUAGuUGGGGg----------GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 142962 0.7 0.400318
Target:  5'- gCCCAUCgCCAUCcacAACCUCCUgccgcgGGuGGGCc -3'
miRNA:   3'- -GGGUAGgGGUAG---UUGGGGGG------CC-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 142765 0.68 0.561096
Target:  5'- cCCCGggcccCCCCA-CAACUCUCUGgucuGGGGCc -3'
miRNA:   3'- -GGGUa----GGGGUaGUUGGGGGGC----CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 142724 0.75 0.201553
Target:  5'- cCCCGggcCCCCA-CAACUCUcuggCCGGGGGCc -3'
miRNA:   3'- -GGGUa--GGGGUaGUUGGGG----GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 142686 0.68 0.542058
Target:  5'- cCCCccCCCCA-CAACUCUCUGgucuGGGGCc -3'
miRNA:   3'- -GGGuaGGGGUaGUUGGGGGGC----CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 141574 0.66 0.628836
Target:  5'- aUCC-UCCgCCGcUCcuCCCCCCGGGcgagagccgcccGGCg -3'
miRNA:   3'- -GGGuAGG-GGU-AGuuGGGGGGCCC------------CCG- -5'
29490 3' -62.2 NC_006151.1 + 141447 0.66 0.657056
Target:  5'- -aCGUCCCCGUaggagggCggUCUggagCCGGGGGCg -3'
miRNA:   3'- ggGUAGGGGUA-------GuuGGGg---GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 140190 0.74 0.242835
Target:  5'- gCUgGaCCCCAUCGugGCCaCCgCGGGGGCg -3'
miRNA:   3'- -GGgUaGGGGUAGU--UGG-GGgGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 139945 0.66 0.624941
Target:  5'- gCCGUCCUCGaguUCGGCgccgagcaguucaCCCCGGacGGGCg -3'
miRNA:   3'- gGGUAGGGGU---AGUUGg------------GGGGCC--CCCG- -5'
29490 3' -62.2 NC_006151.1 + 139062 0.72 0.310781
Target:  5'- gCUCAUCCUCcUCGAgcucgggcuCCgCCUGGGGGCg -3'
miRNA:   3'- -GGGUAGGGGuAGUU---------GGgGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 138587 0.73 0.263604
Target:  5'- cCCCA-CCCCGUCGuguacgcggcgcuGCCgcucggcgaggacgCCgCCGGGGGCg -3'
miRNA:   3'- -GGGUaGGGGUAGU-------------UGG--------------GG-GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 136636 0.7 0.407666
Target:  5'- cCCCGcggCgCCCGUgGggcgcucGCCCCUCGGGGaGCg -3'
miRNA:   3'- -GGGUa--G-GGGUAgU-------UGGGGGGCCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 136339 0.79 0.124155
Target:  5'- cCCCAaCCCCAgCGGCCuggaCCCCGcGGGGCu -3'
miRNA:   3'- -GGGUaGGGGUaGUUGG----GGGGC-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 135058 0.79 0.112412
Target:  5'- cCCCcUCCUCGUCuuCCCCCgccuccucgggCGGGGGCg -3'
miRNA:   3'- -GGGuAGGGGUAGuuGGGGG-----------GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 134404 0.82 0.067822
Target:  5'- -aCAUCCCCugcccgCGcgagcuggugcuGCCCCCCGGGGGCg -3'
miRNA:   3'- ggGUAGGGGua----GU------------UGGGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 133282 0.77 0.158643
Target:  5'- gCCGgcggcggCCCaCGUCGAgguuCUCCCCGGGGGCg -3'
miRNA:   3'- gGGUa------GGG-GUAGUU----GGGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 131312 0.7 0.397888
Target:  5'- cCUCGUCCCCGUCGucgucccccuccucACCCCCgCGccGGCc -3'
miRNA:   3'- -GGGUAGGGGUAGU--------------UGGGGG-GCccCCG- -5'
29490 3' -62.2 NC_006151.1 + 130906 0.74 0.248464
Target:  5'- gCCGUCgCCGUCGucggugGCCgggCCCgCGGGGGCg -3'
miRNA:   3'- gGGUAGgGGUAGU------UGG---GGG-GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 129189 0.8 0.094328
Target:  5'- gCCAcggCCgCCGUCAgcACCuCCCCGGGGGCc -3'
miRNA:   3'- gGGUa--GG-GGUAGU--UGG-GGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 127881 0.71 0.383506
Target:  5'- gCCGUCCaCCuccagcucGUCGuccgagcucggggGCCCCUCGGGGaGCg -3'
miRNA:   3'- gGGUAGG-GG--------UAGU-------------UGGGGGGCCCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.