Results 1 - 20 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29490 | 3' | -62.2 | NC_006151.1 | + | 44108 | 1.13 | 0.000497 |
Target: 5'- gCCCAUCCCCAUCAACCCCCCGGGGGCg -3' miRNA: 3'- -GGGUAGGGGUAGUUGGGGGGCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 33877 | 0.86 | 0.036524 |
Target: 5'- cCCCAUCCCgGac--CCCCCCGGGGGCg -3' miRNA: 3'- -GGGUAGGGgUaguuGGGGGGCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 134404 | 0.82 | 0.067822 |
Target: 5'- -aCAUCCCCugcccgCGcgagcuggugcuGCCCCCCGGGGGCg -3' miRNA: 3'- ggGUAGGGGua----GU------------UGGGGGGCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 129189 | 0.8 | 0.094328 |
Target: 5'- gCCAcggCCgCCGUCAgcACCuCCCCGGGGGCc -3' miRNA: 3'- gGGUa--GG-GGUAGU--UGG-GGGGCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 1 | 0.8 | 0.104295 |
Target: 5'- CCCAcCCCCc---GCUCCCCGGGGGCc -3' miRNA: 3'- GGGUaGGGGuaguUGGGGGGCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 56475 | 0.79 | 0.112412 |
Target: 5'- cCCCAUCgCCCAgcgccugcugUCGGCCCCCCGGGccccGCc -3' miRNA: 3'- -GGGUAG-GGGU----------AGUUGGGGGGCCCc---CG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 135058 | 0.79 | 0.112412 |
Target: 5'- cCCCcUCCUCGUCuuCCCCCgccuccucgggCGGGGGCg -3' miRNA: 3'- -GGGuAGGGGUAGuuGGGGG-----------GCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 136339 | 0.79 | 0.124155 |
Target: 5'- cCCCAaCCCCAgCGGCCuggaCCCCGcGGGGCu -3' miRNA: 3'- -GGGUaGGGGUaGUUGG----GGGGC-CCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 143234 | 0.78 | 0.127264 |
Target: 5'- cCCCcUCCCCAUUcACCCCaauggaaaacgCGGGGGCg -3' miRNA: 3'- -GGGuAGGGGUAGuUGGGGg----------GCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 133282 | 0.77 | 0.158643 |
Target: 5'- gCCGgcggcggCCCaCGUCGAgguuCUCCCCGGGGGCg -3' miRNA: 3'- gGGUa------GGG-GUAGUU----GGGGGGCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 14881 | 0.77 | 0.162533 |
Target: 5'- cCCCGccguucUCgCCCGUCGACCCgCCCGGGccccGGCc -3' miRNA: 3'- -GGGU------AG-GGGUAGUUGGG-GGGCCC----CCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 14947 | 0.76 | 0.17472 |
Target: 5'- cCCCGUCCCCcgccUCGACCCCCagccccccaagCGcGGGCg -3' miRNA: 3'- -GGGUAGGGGu---AGUUGGGGG-----------GCcCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 65764 | 0.76 | 0.17896 |
Target: 5'- cCCCGUCCCCGUC-GCCgCCgGcGGcGGCg -3' miRNA: 3'- -GGGUAGGGGUAGuUGGgGGgC-CC-CCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 28293 | 0.76 | 0.182854 |
Target: 5'- gCCCGgcucCCCCAUUGGCCggcgcguCCCCGGGGcGCc -3' miRNA: 3'- -GGGUa---GGGGUAGUUGG-------GGGGCCCC-CG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 84184 | 0.76 | 0.183291 |
Target: 5'- uCCUcgCCgCCGcCGugCCCCCGGGcGGCg -3' miRNA: 3'- -GGGuaGG-GGUaGUugGGGGGCCC-CCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 142724 | 0.75 | 0.201553 |
Target: 5'- cCCCGggcCCCCA-CAACUCUcuggCCGGGGGCc -3' miRNA: 3'- -GGGUa--GGGGUaGUUGGGG----GGCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 44000 | 0.75 | 0.201553 |
Target: 5'- aCCCAccccCCCCcgCAGCCCCCgccccgCGGGGaGCc -3' miRNA: 3'- -GGGUa---GGGGuaGUUGGGGG------GCCCC-CG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 8305 | 0.75 | 0.21627 |
Target: 5'- gCCgCGUCCCgCccCGAgCCCCCGGGGcGCg -3' miRNA: 3'- -GG-GUAGGG-GuaGUUgGGGGGCCCC-CG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 42743 | 0.75 | 0.220347 |
Target: 5'- cCCCAcCCCCGUgCAucccucuccccuCUCCCCGGGGGg -3' miRNA: 3'- -GGGUaGGGGUA-GUu-----------GGGGGGCCCCCg -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 11286 | 0.75 | 0.221376 |
Target: 5'- cCCCGUCCCCGUCc-CCCgCCCGcucucccGGGCc -3' miRNA: 3'- -GGGUAGGGGUAGuuGGG-GGGCc------CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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