miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 9468 0.72 0.33166
Target:  5'- uCCgCGUCCgCuUCGGCCCCCCGcGGccgcGGCg -3'
miRNA:   3'- -GG-GUAGGgGuAGUUGGGGGGC-CC----CCG- -5'
29490 3' -62.2 NC_006151.1 + 55450 0.72 0.338846
Target:  5'- aCCggCgCCGcCGGCCCCgCCGGGGGg -3'
miRNA:   3'- gGGuaGgGGUaGUUGGGG-GGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 120447 0.72 0.338846
Target:  5'- gCUguUCCCCcgCGgcaaGCCgCCCGGcGGGCa -3'
miRNA:   3'- -GGguAGGGGuaGU----UGGgGGGCC-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 42463 0.72 0.346143
Target:  5'- gCCGUCUCCuccuccccCAACUCCCCGGGcGCc -3'
miRNA:   3'- gGGUAGGGGua------GUUGGGGGGCCCcCG- -5'
29490 3' -62.2 NC_006151.1 + 64177 0.71 0.352806
Target:  5'- cCCCGcCCCCGUCGccGCCcgcgaucgCCCCGGGcagguccGGCg -3'
miRNA:   3'- -GGGUaGGGGUAGU--UGG--------GGGGCCC-------CCG- -5'
29490 3' -62.2 NC_006151.1 + 109607 0.71 0.353552
Target:  5'- aCCCcgCCgCCGUCgGACCCgCCGGuccaguuccccGGGCg -3'
miRNA:   3'- -GGGuaGG-GGUAG-UUGGGgGGCC-----------CCCG- -5'
29490 3' -62.2 NC_006151.1 + 12977 0.71 0.368705
Target:  5'- uCCCA-CCCCAcccucccgacUC-ACCCguCCCGGGGGa -3'
miRNA:   3'- -GGGUaGGGGU----------AGuUGGG--GGGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 125211 0.71 0.368705
Target:  5'- cCCCGcggCCCCcgCGGCCgCCCGucGGGCc -3'
miRNA:   3'- -GGGUa--GGGGuaGUUGGgGGGCc-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 69692 0.71 0.368705
Target:  5'- gCC-UCgCCGUCGauggugGCCgCCgCCGGGGGCa -3'
miRNA:   3'- gGGuAGgGGUAGU------UGG-GG-GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 34109 0.71 0.376446
Target:  5'- gCCCcgCCCCuuugCAcccGCCCCCCcaccGGGCg -3'
miRNA:   3'- -GGGuaGGGGua--GU---UGGGGGGcc--CCCG- -5'
29490 3' -62.2 NC_006151.1 + 27795 0.71 0.376446
Target:  5'- gCCCA-CCCgccCAACCCaaCCCGGGGGa -3'
miRNA:   3'- -GGGUaGGGguaGUUGGG--GGGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 26575 0.71 0.376446
Target:  5'- gCCC-UCUCCGUCcgAGCCguCCUCGGGGGg -3'
miRNA:   3'- -GGGuAGGGGUAG--UUGG--GGGGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 47872 0.71 0.376446
Target:  5'- cCCCAgacuccCCCCAgacuCCCCCCGGGacGCu -3'
miRNA:   3'- -GGGUa-----GGGGUaguuGGGGGGCCCc-CG- -5'
29490 3' -62.2 NC_006151.1 + 50844 0.71 0.379573
Target:  5'- gCCGUCCCC-UCGGCggccgcccucccgcgCCCCCGgaccccgucccGGGGCc -3'
miRNA:   3'- gGGUAGGGGuAGUUG---------------GGGGGC-----------CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 127881 0.71 0.383506
Target:  5'- gCCGUCCaCCuccagcucGUCGuccgagcucggggGCCCCUCGGGGaGCg -3'
miRNA:   3'- gGGUAGG-GG--------UAGU-------------UGGGGGGCCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 14608 0.71 0.384296
Target:  5'- aUCCAUCCaauCCAUcCAGCCaCCCCcacccgucGGGGCg -3'
miRNA:   3'- -GGGUAGG---GGUA-GUUGG-GGGGc-------CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 72903 0.71 0.384296
Target:  5'- gCCAgcCCCCGgcucuuggCGACCgCCUCGGcGGGCg -3'
miRNA:   3'- gGGUa-GGGGUa-------GUUGG-GGGGCC-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 78796 0.71 0.384296
Target:  5'- aCUcgCCCg--CGGCCCUCCGcGGGGCc -3'
miRNA:   3'- gGGuaGGGguaGUUGGGGGGC-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 61420 0.71 0.384296
Target:  5'- gCCGUCCUCcUCGGCCCCgCCGcGGcGCc -3'
miRNA:   3'- gGGUAGGGGuAGUUGGGG-GGCcCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 52362 0.71 0.392254
Target:  5'- gUCGUCCgCCggCGcGCCCCCggggcccgCGGGGGCg -3'
miRNA:   3'- gGGUAGG-GGuaGU-UGGGGG--------GCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.