miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 34061 0.67 0.599663
Target:  5'- uUCGUCuCCCGg-AGCgCCCCCGGGGu- -3'
miRNA:   3'- gGGUAG-GGGUagUUG-GGGGGCCCCcg -5'
29490 3' -62.2 NC_006151.1 + 17800 0.67 0.599663
Target:  5'- gCCC--CCCCG--GACCCCCCcuccugggcgcgGcGGGGCg -3'
miRNA:   3'- -GGGuaGGGGUagUUGGGGGG------------C-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 32329 0.67 0.598693
Target:  5'- uCCgCGUCCCCAUCu-CCgaggCCCGaggcgccGGGGCu -3'
miRNA:   3'- -GG-GUAGGGGUAGuuGGg---GGGC-------CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 45573 0.67 0.589974
Target:  5'- gCCAUCguCCCGggaCGGCCCga-GGGGGCg -3'
miRNA:   3'- gGGUAG--GGGUa--GUUGGGgggCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 47951 0.67 0.589974
Target:  5'- cUCCAguugCCCC----GCCCCCCGGcacguGGCa -3'
miRNA:   3'- -GGGUa---GGGGuaguUGGGGGGCCc----CCG- -5'
29490 3' -62.2 NC_006151.1 + 63799 0.67 0.589974
Target:  5'- gCCGUCgCCAgCGccucGCCgggCCCCGGGGcGCc -3'
miRNA:   3'- gGGUAGgGGUaGU----UGG---GGGGCCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 54612 0.67 0.589974
Target:  5'- uCCCGgugCgCCGggcGCgCCCCGGGGGg -3'
miRNA:   3'- -GGGUa--GgGGUaguUGgGGGGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 33913 0.67 0.584173
Target:  5'- gCC-UCCgCGUCcggcgggcggaucgaGGCCcgcgcgCCCCGGGGGCu -3'
miRNA:   3'- gGGuAGGgGUAG---------------UUGG------GGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 31826 0.67 0.580312
Target:  5'- uCCC-UCCCCGccggccUCGGCCCaCCCGc-GGCg -3'
miRNA:   3'- -GGGuAGGGGU------AGUUGGG-GGGCccCCG- -5'
29490 3' -62.2 NC_006151.1 + 43661 0.67 0.579348
Target:  5'- gCCuUCCaCCAaaAACCCCCUGgcgacgaGGGGCc -3'
miRNA:   3'- gGGuAGG-GGUagUUGGGGGGC-------CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 13888 0.67 0.578384
Target:  5'- cCCCAcgugcCCCCAUUGGCgauuuaucgaucgcuUuccgaagggaucgaaCCCCGGGGGCg -3'
miRNA:   3'- -GGGUa----GGGGUAGUUG---------------G---------------GGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 20601 0.67 0.574531
Target:  5'- aCUCGUCCgCGgacgacggCGugggguggugggggcGCCCCCUGGGcGGCa -3'
miRNA:   3'- -GGGUAGGgGUa-------GU---------------UGGGGGGCCC-CCG- -5'
29490 3' -62.2 NC_006151.1 + 114910 0.67 0.570685
Target:  5'- gCCCGggcgcacggCCCCGgcgucgcgcUCGGCCUCCgGGguGGGCg -3'
miRNA:   3'- -GGGUa--------GGGGU---------AGUUGGGGGgCC--CCCG- -5'
29490 3' -62.2 NC_006151.1 + 65065 0.67 0.569724
Target:  5'- gCCCGUUaauaaagUCCAUCAGCaCCCgCGuGGGCc -3'
miRNA:   3'- -GGGUAG-------GGGUAGUUG-GGGgGCcCCCG- -5'
29490 3' -62.2 NC_006151.1 + 142765 0.68 0.561096
Target:  5'- cCCCGggcccCCCCA-CAACUCUCUGgucuGGGGCc -3'
miRNA:   3'- -GGGUa----GGGGUaGUUGGGGGGC----CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 23131 0.68 0.561096
Target:  5'- gCCCcUCCuCCGUCGccggGCCCUCgGcGGGaGCg -3'
miRNA:   3'- -GGGuAGG-GGUAGU----UGGGGGgC-CCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 77878 0.68 0.551552
Target:  5'- -gCAUCCCCggCGugcGCCCCCCGcucaGcGGCg -3'
miRNA:   3'- ggGUAGGGGuaGU---UGGGGGGCc---C-CCG- -5'
29490 3' -62.2 NC_006151.1 + 46811 0.68 0.54585
Target:  5'- gCCCGUcgcccucugccucugCCCCcgagaccgCcGCCCCCCG-GGGCg -3'
miRNA:   3'- -GGGUA---------------GGGGua------GuUGGGGGGCcCCCG- -5'
29490 3' -62.2 NC_006151.1 + 142686 0.68 0.542058
Target:  5'- cCCCccCCCCA-CAACUCUCUGgucuGGGGCc -3'
miRNA:   3'- -GGGuaGGGGUaGUUGGGGGGC----CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 12822 0.68 0.542058
Target:  5'- cCCCucUCCCCG-CcGCCCCCCGc-GGCc -3'
miRNA:   3'- -GGGu-AGGGGUaGuUGGGGGGCccCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.