miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 82150 0.66 0.638573
Target:  5'- gCCCGgcggCUCCAggucCGAgCCgagcgCCGGGGGCg -3'
miRNA:   3'- -GGGUa---GGGGUa---GUUgGGg----GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 86285 0.66 0.638573
Target:  5'- cCCCuucuUCCUCggcgucGUCAACUgCCCgcagcuGGGGGCc -3'
miRNA:   3'- -GGGu---AGGGG------UAGUUGGgGGG------CCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 108301 0.66 0.638573
Target:  5'- cCCCGgcggcgacCCCCAc--GCCCCCCGcgcccGGGCc -3'
miRNA:   3'- -GGGUa-------GGGGUaguUGGGGGGCc----CCCG- -5'
29490 3' -62.2 NC_006151.1 + 81787 0.66 0.637599
Target:  5'- gCUCGgcgCgCCCGUCGaagaGCCCggcgaagCCCGcGGGGCa -3'
miRNA:   3'- -GGGUa--G-GGGUAGU----UGGG-------GGGC-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 41540 0.66 0.628836
Target:  5'- cCCCcgCCCgCG--GACCCCCgGugcgacggaaGGGGCa -3'
miRNA:   3'- -GGGuaGGG-GUagUUGGGGGgC----------CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 141574 0.66 0.628836
Target:  5'- aUCC-UCCgCCGcUCcuCCCCCCGGGcgagagccgcccGGCg -3'
miRNA:   3'- -GGGuAGG-GGU-AGuuGGGGGGCCC------------CCG- -5'
29490 3' -62.2 NC_006151.1 + 35220 0.66 0.628836
Target:  5'- gCCCAUUggCCCGggCGagccgagaugGCCgCCgCGGGGGCc -3'
miRNA:   3'- -GGGUAG--GGGUa-GU----------UGGgGG-GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 46563 0.66 0.628836
Target:  5'- gCCCAggcgcUCCCCGcgCAggGCCCgaCGGGcGGCc -3'
miRNA:   3'- -GGGU-----AGGGGUa-GU--UGGGggGCCC-CCG- -5'
29490 3' -62.2 NC_006151.1 + 38625 0.66 0.628836
Target:  5'- ---cUCUCCGgcgCGGCCCUCCGcGGGGa -3'
miRNA:   3'- ggguAGGGGUa--GUUGGGGGGC-CCCCg -5'
29490 3' -62.2 NC_006151.1 + 14449 0.66 0.627862
Target:  5'- cCCCcUCCCCu----CCCCCgGGuuggguuGGGCg -3'
miRNA:   3'- -GGGuAGGGGuaguuGGGGGgCC-------CCCG- -5'
29490 3' -62.2 NC_006151.1 + 139945 0.66 0.624941
Target:  5'- gCCGUCCUCGaguUCGGCgccgagcaguucaCCCCGGacGGGCg -3'
miRNA:   3'- gGGUAGGGGU---AGUUGg------------GGGGCC--CCCG- -5'
29490 3' -62.2 NC_006151.1 + 111818 0.67 0.622994
Target:  5'- gCCGUCcugCCCGUgGACCUggaagacgcaccgcgUCgGGGGGCg -3'
miRNA:   3'- gGGUAG---GGGUAgUUGGG---------------GGgCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 39997 0.67 0.620074
Target:  5'- gCCGUgcucugggacuuugcCCCCuUCGagaccagcguccgcGCCgCCgCCGGGGGCg -3'
miRNA:   3'- gGGUA---------------GGGGuAGU--------------UGG-GG-GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 32560 0.67 0.6191
Target:  5'- uCCCGUCuCCCG--GGCaCCCgCGGccGGGCg -3'
miRNA:   3'- -GGGUAG-GGGUagUUG-GGGgGCC--CCCG- -5'
29490 3' -62.2 NC_006151.1 + 36595 0.67 0.6191
Target:  5'- gCCCGcuUCCCCAgcc-UCCCCCGccgccGGGCc -3'
miRNA:   3'- -GGGU--AGGGGUaguuGGGGGGCc----CCCG- -5'
29490 3' -62.2 NC_006151.1 + 23225 0.67 0.609374
Target:  5'- cUCC-UCCUCgGUCAccuccuCgCCCUCGGGGGCc -3'
miRNA:   3'- -GGGuAGGGG-UAGUu-----G-GGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 5421 0.67 0.609374
Target:  5'- gUCCGUCCUCGUC--CUUCUCGGGGccGCg -3'
miRNA:   3'- -GGGUAGGGGUAGuuGGGGGGCCCC--CG- -5'
29490 3' -62.2 NC_006151.1 + 36454 0.67 0.609374
Target:  5'- uCCCggCCCCucggCAGCCCCgCGGagauGGUc -3'
miRNA:   3'- -GGGuaGGGGua--GUUGGGGgGCCc---CCG- -5'
29490 3' -62.2 NC_006151.1 + 114668 0.67 0.606459
Target:  5'- gCCCGUgagcgccgcgaaggCCUCGugcUCGAagggcgcgUCCCCGGGGGCg -3'
miRNA:   3'- -GGGUA--------------GGGGU---AGUUg-------GGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 34061 0.67 0.599663
Target:  5'- uUCGUCuCCCGg-AGCgCCCCCGGGGu- -3'
miRNA:   3'- gGGUAG-GGGUagUUG-GGGGGCCCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.