miRNA display CGI


Results 41 - 60 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 31826 0.67 0.580312
Target:  5'- uCCC-UCCCCGccggccUCGGCCCaCCCGc-GGCg -3'
miRNA:   3'- -GGGuAGGGGU------AGUUGGG-GGGCccCCG- -5'
29490 3' -62.2 NC_006151.1 + 32329 0.67 0.598693
Target:  5'- uCCgCGUCCCCAUCu-CCgaggCCCGaggcgccGGGGCu -3'
miRNA:   3'- -GG-GUAGGGGUAGuuGGg---GGGC-------CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 32560 0.67 0.6191
Target:  5'- uCCCGUCuCCCG--GGCaCCCgCGGccGGGCg -3'
miRNA:   3'- -GGGUAG-GGGUagUUG-GGGgGCC--CCCG- -5'
29490 3' -62.2 NC_006151.1 + 32740 0.66 0.649279
Target:  5'- cCCCGUCCCCucuUCcuuCCCcacacgccccgcucuCCCacgccgcggccgcgGGGGGCc -3'
miRNA:   3'- -GGGUAGGGGu--AGuu-GGG---------------GGG--------------CCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 33205 0.68 0.513925
Target:  5'- gCCGgcgcCCCCGgagCAcgcgggGCgCCCCGGcGGGCg -3'
miRNA:   3'- gGGUa---GGGGUa--GU------UGgGGGGCC-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 33281 0.7 0.400318
Target:  5'- gCCAUCgCC--CGACCcuuCCCCGGGGcGCg -3'
miRNA:   3'- gGGUAGgGGuaGUUGG---GGGGCCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 33877 0.86 0.036524
Target:  5'- cCCCAUCCCgGac--CCCCCCGGGGGCg -3'
miRNA:   3'- -GGGUAGGGgUaguuGGGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 33913 0.67 0.584173
Target:  5'- gCC-UCCgCGUCcggcgggcggaucgaGGCCcgcgcgCCCCGGGGGCu -3'
miRNA:   3'- gGGuAGGgGUAG---------------UUGG------GGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 34061 0.67 0.599663
Target:  5'- uUCGUCuCCCGg-AGCgCCCCCGGGGu- -3'
miRNA:   3'- gGGUAG-GGGUagUUG-GGGGGCCCCcg -5'
29490 3' -62.2 NC_006151.1 + 34109 0.71 0.376446
Target:  5'- gCCCcgCCCCuuugCAcccGCCCCCCcaccGGGCg -3'
miRNA:   3'- -GGGuaGGGGua--GU---UGGGGGGcc--CCCG- -5'
29490 3' -62.2 NC_006151.1 + 35220 0.66 0.628836
Target:  5'- gCCCAUUggCCCGggCGagccgagaugGCCgCCgCGGGGGCc -3'
miRNA:   3'- -GGGUAG--GGGUa-GU----------UGGgGG-GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 35385 0.68 0.522305
Target:  5'- uCCCAUUggCCGUCGauggggcaagaugGCCgCCgCGGGGGCc -3'
miRNA:   3'- -GGGUAGg-GGUAGU-------------UGGgGG-GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 36155 0.73 0.274518
Target:  5'- cCCCGUCCuCCuUCGGCCcagcagcagcagcagCCCCGccGGGGCu -3'
miRNA:   3'- -GGGUAGG-GGuAGUUGG---------------GGGGC--CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 36247 0.69 0.459604
Target:  5'- gCCCggGUCCCCGgccgCcgggUCCCCCGGucGGGCu -3'
miRNA:   3'- -GGG--UAGGGGUa---Guu--GGGGGGCC--CCCG- -5'
29490 3' -62.2 NC_006151.1 + 36310 0.66 0.658027
Target:  5'- cCUCGUCCUCG--GGCCCcgguCCCGGGccGGCu -3'
miRNA:   3'- -GGGUAGGGGUagUUGGG----GGGCCC--CCG- -5'
29490 3' -62.2 NC_006151.1 + 36411 0.68 0.52324
Target:  5'- gCUCGUCCCCcuccgCAGCCuCCCCGGccuccuccuccGGCu -3'
miRNA:   3'- -GGGUAGGGGua---GUUGG-GGGGCCc----------CCG- -5'
29490 3' -62.2 NC_006151.1 + 36454 0.67 0.609374
Target:  5'- uCCCggCCCCucggCAGCCCCgCGGagauGGUc -3'
miRNA:   3'- -GGGuaGGGGua--GUUGGGGgGCCc---CCG- -5'
29490 3' -62.2 NC_006151.1 + 36595 0.67 0.6191
Target:  5'- gCCCGcuUCCCCAgcc-UCCCCCGccgccGGGCc -3'
miRNA:   3'- -GGGU--AGGGGUaguuGGGGGGCc----CCCG- -5'
29490 3' -62.2 NC_006151.1 + 36983 0.69 0.486405
Target:  5'- aCCUcUCCCCGgcccgcucgcccUCcGCCCCCCGGGcccccGCc -3'
miRNA:   3'- -GGGuAGGGGU------------AGuUGGGGGGCCCc----CG- -5'
29490 3' -62.2 NC_006151.1 + 37491 0.68 0.52324
Target:  5'- gCCCGUgCCCGUCuucAUCCCggagaUGGGGGa -3'
miRNA:   3'- -GGGUAgGGGUAGu--UGGGGg----GCCCCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.