miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29491 3' -58.2 NC_006151.1 + 43804 1.09 0.001446
Target:  5'- gGGUACCCACCCGCUGCCAAGCAGCAGc -3'
miRNA:   3'- -CCAUGGGUGGGCGACGGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 115557 0.75 0.316354
Target:  5'- cGUACUCGCCCGCgGgCGGGCGcGCGGg -3'
miRNA:   3'- cCAUGGGUGGGCGaCgGUUCGU-CGUC- -5'
29491 3' -58.2 NC_006151.1 + 38126 0.75 0.323622
Target:  5'- cGGgGCCgGCCCG--GCCGAGCGGCGGc -3'
miRNA:   3'- -CCaUGGgUGGGCgaCGGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 136960 0.74 0.334006
Target:  5'- -cUGCgCCGCCUGCUggagcuggccgccgcGCCGGGCGGCGGg -3'
miRNA:   3'- ccAUG-GGUGGGCGA---------------CGGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 92659 0.73 0.386192
Target:  5'- aGGcGCUCGCCCuGCUGCC-GGCGGcCGGg -3'
miRNA:   3'- -CCaUGGGUGGG-CGACGGuUCGUC-GUC- -5'
29491 3' -58.2 NC_006151.1 + 109035 0.73 0.411627
Target:  5'- cGG-GCCCACCgGCgGCagcAGCAGCAGc -3'
miRNA:   3'- -CCaUGGGUGGgCGaCGgu-UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 11016 0.73 0.420333
Target:  5'- --cGCCCGCCCGCUcgcucGCCGGGcCGGCc- -3'
miRNA:   3'- ccaUGGGUGGGCGA-----CGGUUC-GUCGuc -5'
29491 3' -58.2 NC_006151.1 + 2643 0.72 0.429149
Target:  5'- gGGUGCUCACCguguagcgcaCGUUGuCCuGGCGGCAGa -3'
miRNA:   3'- -CCAUGGGUGG----------GCGAC-GGuUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 82659 0.72 0.438074
Target:  5'- aGGgcgGCCCACCCuGCggcgcGCCGcgggcgagGGCGGCGGc -3'
miRNA:   3'- -CCa--UGGGUGGG-CGa----CGGU--------UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 135466 0.72 0.447104
Target:  5'- aGGUGCgCGCCagcgugucCGCgcggGCCAGGCGGCGc -3'
miRNA:   3'- -CCAUGgGUGG--------GCGa---CGGUUCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 115754 0.72 0.447104
Target:  5'- -aUGgCCGCCUGCUGCUGuccAGCAGCAc -3'
miRNA:   3'- ccAUgGGUGGGCGACGGU---UCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 75653 0.72 0.456236
Target:  5'- cGGggGCCgGCUCGCcGCCGAGCAGgUAGc -3'
miRNA:   3'- -CCa-UGGgUGGGCGaCGGUUCGUC-GUC- -5'
29491 3' -58.2 NC_006151.1 + 90888 0.72 0.456236
Target:  5'- cGUuCCCgGCCCGCaGCCGcuGCAGCAGc -3'
miRNA:   3'- cCAuGGG-UGGGCGaCGGUu-CGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 72249 0.72 0.456236
Target:  5'- -cUGCCCGCggCCGCcgacGCCGAGCGGCGu -3'
miRNA:   3'- ccAUGGGUG--GGCGa---CGGUUCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 39078 0.72 0.465468
Target:  5'- uGGUGCUCuacgACCCGCUGCCccacGAGgAGCu- -3'
miRNA:   3'- -CCAUGGG----UGGGCGACGG----UUCgUCGuc -5'
29491 3' -58.2 NC_006151.1 + 120341 0.71 0.474796
Target:  5'- --cGCgCGCCCGCgugGCCGGGCucGCGGg -3'
miRNA:   3'- ccaUGgGUGGGCGa--CGGUUCGu-CGUC- -5'
29491 3' -58.2 NC_006151.1 + 58144 0.71 0.484216
Target:  5'- cGUACgCGgCCGCgUGCCAccGGCGGUAGa -3'
miRNA:   3'- cCAUGgGUgGGCG-ACGGU--UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 117042 0.71 0.484216
Target:  5'- cGGUACCaGCCgaaGCUgggcaggucgugGUCGAGCAGCAGg -3'
miRNA:   3'- -CCAUGGgUGGg--CGA------------CGGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 2015 0.71 0.493726
Target:  5'- aGGggGCgC-CCCGCUcaGCgGAGCAGCAGg -3'
miRNA:   3'- -CCa-UGgGuGGGCGA--CGgUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 86180 0.71 0.503319
Target:  5'- cGUGgCCGCCgCGCUGCCcc-CGGCGGg -3'
miRNA:   3'- cCAUgGGUGG-GCGACGGuucGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.