miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29491 3' -58.2 NC_006151.1 + 800 0.67 0.753244
Target:  5'- --cAUCguCCCGCcgGCCAaucgguGGCAGCGGg -3'
miRNA:   3'- ccaUGGguGGGCGa-CGGU------UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 2015 0.71 0.493726
Target:  5'- aGGggGCgC-CCCGCUcaGCgGAGCAGCAGg -3'
miRNA:   3'- -CCa-UGgGuGGGCGA--CGgUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 2643 0.72 0.429149
Target:  5'- gGGUGCUCACCguguagcgcaCGUUGuCCuGGCGGCAGa -3'
miRNA:   3'- -CCAUGGGUGG----------GCGAC-GGuUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 2919 0.68 0.704254
Target:  5'- --gGCgCCGCgCCGC-GCCGAGCcgcgAGCAGa -3'
miRNA:   3'- ccaUG-GGUG-GGCGaCGGUUCG----UCGUC- -5'
29491 3' -58.2 NC_006151.1 + 4780 0.67 0.724095
Target:  5'- cGGgcacggGCCCGgCCGCgGCgcGGUAGCGGg -3'
miRNA:   3'- -CCa-----UGGGUgGGCGaCGguUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 7095 0.67 0.762761
Target:  5'- -aUGCCCgGCCCGCUcugcgGCCAucuuGGCcGCGGc -3'
miRNA:   3'- ccAUGGG-UGGGCGA-----CGGU----UCGuCGUC- -5'
29491 3' -58.2 NC_006151.1 + 7637 0.66 0.799587
Target:  5'- cGGUcgcCCCACCCGC-GCCucGCgcucGGCGc -3'
miRNA:   3'- -CCAu--GGGUGGGCGaCGGuuCG----UCGUc -5'
29491 3' -58.2 NC_006151.1 + 9181 0.66 0.780518
Target:  5'- --cGCCCGCCCucGCccccuccgucucaUGCCAcccGCGGCAGc -3'
miRNA:   3'- ccaUGGGUGGG--CG-------------ACGGUu--CGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 9482 0.66 0.80844
Target:  5'- --gGCCC-CCCGCgGCC--GCGGCGu -3'
miRNA:   3'- ccaUGGGuGGGCGaCGGuuCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 10276 0.7 0.562391
Target:  5'- ---cCUCGCCgGCUcCCAGGCGGCGGg -3'
miRNA:   3'- ccauGGGUGGgCGAcGGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 10639 0.67 0.753244
Target:  5'- cGUGCCgGcgcggcaucCCCGC--CCAGGCGGCGGg -3'
miRNA:   3'- cCAUGGgU---------GGGCGacGGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 11016 0.73 0.420333
Target:  5'- --cGCCCGCCCGCUcgcucGCCGGGcCGGCc- -3'
miRNA:   3'- ccaUGGGUGGGCGA-----CGGUUC-GUCGuc -5'
29491 3' -58.2 NC_006151.1 + 18545 0.67 0.724095
Target:  5'- cGGcACCCggaacGgCCGCgagGCCGcccGGCGGCGGg -3'
miRNA:   3'- -CCaUGGG-----UgGGCGa--CGGU---UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 18766 0.66 0.799587
Target:  5'- gGGUGCCCgggGCCCGg-GCCGGGgccguCAGCu- -3'
miRNA:   3'- -CCAUGGG---UGGGCgaCGGUUC-----GUCGuc -5'
29491 3' -58.2 NC_006151.1 + 19284 0.67 0.714209
Target:  5'- cGGgGCCCACCgGg-GCCA-GCGGCGc -3'
miRNA:   3'- -CCaUGGGUGGgCgaCGGUuCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 19443 0.67 0.743621
Target:  5'- uGGgcgGCUCGCgCUGgaGCCGcggcaccucgGGCGGCAGg -3'
miRNA:   3'- -CCa--UGGGUG-GGCgaCGGU----------UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 20295 0.66 0.80844
Target:  5'- cGGgGCCCcgggcGCCCGCcgugGCguuGGCGGCGGc -3'
miRNA:   3'- -CCaUGGG-----UGGGCGa---CGgu-UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 24694 0.69 0.612982
Target:  5'- --gGCCCGuCCCGCaugGUCAGGUAGCu- -3'
miRNA:   3'- ccaUGGGU-GGGCGa--CGGUUCGUCGuc -5'
29491 3' -58.2 NC_006151.1 + 32570 0.66 0.790584
Target:  5'- cGGg---CACCCGCgGCCGGGCGGaGGg -3'
miRNA:   3'- -CCauggGUGGGCGaCGGUUCGUCgUC- -5'
29491 3' -58.2 NC_006151.1 + 37142 0.67 0.714209
Target:  5'- --cACUCGCCCGC-GCCGGGCcGCc- -3'
miRNA:   3'- ccaUGGGUGGGCGaCGGUUCGuCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.