miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29491 3' -58.2 NC_006151.1 + 141595 0.66 0.799587
Target:  5'- cGGgcgagAgCCGCCCggcgagGCUGCCGGGaucgGGCGGg -3'
miRNA:   3'- -CCa----UgGGUGGG------CGACGGUUCg---UCGUC- -5'
29491 3' -58.2 NC_006151.1 + 140507 0.7 0.552392
Target:  5'- --cGCCCACCUGCcGCCugacguGCAGCu- -3'
miRNA:   3'- ccaUGGGUGGGCGaCGGuu----CGUCGuc -5'
29491 3' -58.2 NC_006151.1 + 139664 0.71 0.522742
Target:  5'- gGGcGCgCCGCCCGacagGCCcuGCGGCAGc -3'
miRNA:   3'- -CCaUG-GGUGGGCga--CGGuuCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 139355 0.67 0.733902
Target:  5'- uGUACCUcuGCCUGCUGgUAGGgGGCGu -3'
miRNA:   3'- cCAUGGG--UGGGCGACgGUUCgUCGUc -5'
29491 3' -58.2 NC_006151.1 + 137720 0.66 0.78144
Target:  5'- --cGCCCugCCGUcGCCGuacGCGGUGGc -3'
miRNA:   3'- ccaUGGGugGGCGaCGGUu--CGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 137273 0.67 0.761814
Target:  5'- cGGUGCCCGCgggcaCGCUcgaggcgGCCAuGC-GCGGg -3'
miRNA:   3'- -CCAUGGGUGg----GCGA-------CGGUuCGuCGUC- -5'
29491 3' -58.2 NC_006151.1 + 136960 0.74 0.334006
Target:  5'- -cUGCgCCGCCUGCUggagcuggccgccgcGCCGGGCGGCGGg -3'
miRNA:   3'- ccAUG-GGUGGGCGA---------------CGGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 135703 0.66 0.799587
Target:  5'- cGUACUCGCUgaUGCUGCUcacGGGCAGgAGc -3'
miRNA:   3'- cCAUGGGUGG--GCGACGG---UUCGUCgUC- -5'
29491 3' -58.2 NC_006151.1 + 135466 0.72 0.447104
Target:  5'- aGGUGCgCGCCagcgugucCGCgcggGCCAGGCGGCGc -3'
miRNA:   3'- -CCAUGgGUGG--------GCGa---CGGUUCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 132825 0.68 0.684171
Target:  5'- gGGcUGgCCGCCCGCgggacgGCCAccacgGGCGGCc- -3'
miRNA:   3'- -CC-AUgGGUGGGCGa-----CGGU-----UCGUCGuc -5'
29491 3' -58.2 NC_006151.1 + 131414 0.66 0.772162
Target:  5'- cGGgcUCCuccuCCuCGCUGCUcuccucgucGGGCGGCGGg -3'
miRNA:   3'- -CCauGGGu---GG-GCGACGG---------UUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 130975 0.7 0.552392
Target:  5'- cGGUACCCcggccGCCCggGCUGaaaCuGGCGGCGGu -3'
miRNA:   3'- -CCAUGGG-----UGGG--CGACg--GuUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 130920 0.7 0.562391
Target:  5'- cGGUGgCCggGCCCGCggggGCgGgGGCGGCGGg -3'
miRNA:   3'- -CCAUgGG--UGGGCGa---CGgU-UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 130714 0.69 0.612982
Target:  5'- gGGgcgGCCCggggGCCCGCgcgGCCGcggcGCAGCGc -3'
miRNA:   3'- -CCa--UGGG----UGGGCGa--CGGUu---CGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 128608 0.67 0.724095
Target:  5'- --cGCgCCACCCGCggcgugcgccCCAGGUGGCGGa -3'
miRNA:   3'- ccaUG-GGUGGGCGac--------GGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 125123 0.68 0.653749
Target:  5'- uGGUGgccuUCCGCCCGCUGaucucgaaCGAGCuggcGCAGc -3'
miRNA:   3'- -CCAU----GGGUGGGCGACg-------GUUCGu---CGUC- -5'
29491 3' -58.2 NC_006151.1 + 121686 0.67 0.733902
Target:  5'- cGG-GCCgACCCgGCcaugGCgGAGCGGCGGc -3'
miRNA:   3'- -CCaUGGgUGGG-CGa---CGgUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 120745 0.69 0.623171
Target:  5'- cGGgACCCGgCCGCgucaugGCCuGGguGCGGc -3'
miRNA:   3'- -CCaUGGGUgGGCGa-----CGGuUCguCGUC- -5'
29491 3' -58.2 NC_006151.1 + 120399 0.66 0.80844
Target:  5'- cGUGCUCaacgGCCCGCUggGCUuccugcugAAGCAGCAc -3'
miRNA:   3'- cCAUGGG----UGGGCGA--CGG--------UUCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 120341 0.71 0.474796
Target:  5'- --cGCgCGCCCGCgugGCCGGGCucGCGGg -3'
miRNA:   3'- ccaUGgGUGGGCGa--CGGUUCGu-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.