miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29491 3' -58.2 NC_006151.1 + 37945 0.68 0.704254
Target:  5'- --aGCCCGgCCGCgUGCCccgcGAGCuGGCGGa -3'
miRNA:   3'- ccaUGGGUgGGCG-ACGG----UUCG-UCGUC- -5'
29491 3' -58.2 NC_006151.1 + 38126 0.75 0.323622
Target:  5'- cGGgGCCgGCCCG--GCCGAGCGGCGGc -3'
miRNA:   3'- -CCaUGGgUGGGCgaCGGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 38323 0.66 0.798694
Target:  5'- cGGaGCCCGcgcccggccugccCCCGCUcugGcCCGAGCAGCc- -3'
miRNA:   3'- -CCaUGGGU-------------GGGCGA---C-GGUUCGUCGuc -5'
29491 3' -58.2 NC_006151.1 + 39078 0.72 0.465468
Target:  5'- uGGUGCUCuacgACCCGCUGCCccacGAGgAGCu- -3'
miRNA:   3'- -CCAUGGG----UGGGCGACGG----UUCgUCGuc -5'
29491 3' -58.2 NC_006151.1 + 39565 0.68 0.684171
Target:  5'- --cGCCCGCCUGCaccccgggGCCGAGCcGCu- -3'
miRNA:   3'- ccaUGGGUGGGCGa-------CGGUUCGuCGuc -5'
29491 3' -58.2 NC_006151.1 + 39627 0.66 0.78144
Target:  5'- cGGUGagCACCCGC-GCCGGGCccCGGa -3'
miRNA:   3'- -CCAUggGUGGGCGaCGGUUCGucGUC- -5'
29491 3' -58.2 NC_006151.1 + 40231 0.68 0.694238
Target:  5'- ---cCCUACCUGCUGCUccGCugAGCGGg -3'
miRNA:   3'- ccauGGGUGGGCGACGGuuCG--UCGUC- -5'
29491 3' -58.2 NC_006151.1 + 41443 0.69 0.633368
Target:  5'- --aGCCuCcCCCGCUGCCAccgauuGGcCGGCGGg -3'
miRNA:   3'- ccaUGG-GuGGGCGACGGU------UC-GUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 43804 1.09 0.001446
Target:  5'- gGGUACCCACCCGCUGCCAAGCAGCAGc -3'
miRNA:   3'- -CCAUGGGUGGGCGACGGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 44167 0.66 0.78144
Target:  5'- cGUGCCCcugggaGCaCCGCgggucGCCGuccgGGCGGCGGc -3'
miRNA:   3'- cCAUGGG------UG-GGCGa----CGGU----UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 44554 0.67 0.740715
Target:  5'- uGGUGgUCGaugauCUCGCUGCCGaggagcuccgcugcAGCGGCGGa -3'
miRNA:   3'- -CCAUgGGU-----GGGCGACGGU--------------UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 46627 0.69 0.602807
Target:  5'- cGGUGCCUGCgaCGCgGCCGgacgGGCGGaCAGg -3'
miRNA:   3'- -CCAUGGGUGg-GCGaCGGU----UCGUC-GUC- -5'
29491 3' -58.2 NC_006151.1 + 48269 0.69 0.643563
Target:  5'- ----aCCACCCGCUGCUggGCcucgAGCc- -3'
miRNA:   3'- ccaugGGUGGGCGACGGuuCG----UCGuc -5'
29491 3' -58.2 NC_006151.1 + 48911 0.67 0.733902
Target:  5'- aGUACCgCGgCCGCUGCCugaccgagGAGguGCu- -3'
miRNA:   3'- cCAUGG-GUgGGCGACGG--------UUCguCGuc -5'
29491 3' -58.2 NC_006151.1 + 49145 0.66 0.772162
Target:  5'- --cGCCCGCCCacgGCUGCCuggaggccuGGGCGcgccGCGGg -3'
miRNA:   3'- ccaUGGGUGGG---CGACGG---------UUCGU----CGUC- -5'
29491 3' -58.2 NC_006151.1 + 50452 0.66 0.772162
Target:  5'- uGGgcaCCGCCCGCgggcgcucgcGCCAGcGCGGCGc -3'
miRNA:   3'- -CCaugGGUGGGCGa---------CGGUU-CGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 50607 0.66 0.78144
Target:  5'- cGGgcCCCGCgCCGCcGC--GGCAGCGu -3'
miRNA:   3'- -CCauGGGUG-GGCGaCGguUCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 51214 0.67 0.762761
Target:  5'- --aGgCCGCCCGCgggcccGCgCAGGCGGCGc -3'
miRNA:   3'- ccaUgGGUGGGCGa-----CG-GUUCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 51470 0.69 0.601791
Target:  5'- cGGUcuGCCCacagcccgacugcGCCCaGCcGCCGGGCAGCu- -3'
miRNA:   3'- -CCA--UGGG-------------UGGG-CGaCGGUUCGUCGuc -5'
29491 3' -58.2 NC_006151.1 + 53511 0.67 0.757064
Target:  5'- aGGUGCuCCGCCgCGC-GCCccgugagccgcuccaGGGCGcGCAGg -3'
miRNA:   3'- -CCAUG-GGUGG-GCGaCGG---------------UUCGU-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.