miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29491 3' -58.2 NC_006151.1 + 137273 0.67 0.761814
Target:  5'- cGGUGCCCGCgggcaCGCUcgaggcgGCCAuGC-GCGGg -3'
miRNA:   3'- -CCAUGGGUGg----GCGA-------CGGUuCGuCGUC- -5'
29491 3' -58.2 NC_006151.1 + 53511 0.67 0.757064
Target:  5'- aGGUGCuCCGCCgCGC-GCCccgugagccgcuccaGGGCGcGCAGg -3'
miRNA:   3'- -CCAUG-GGUGG-GCGaCGG---------------UUCGU-CGUC- -5'
29491 3' -58.2 NC_006151.1 + 10639 0.67 0.753244
Target:  5'- cGUGCCgGcgcggcaucCCCGC--CCAGGCGGCGGg -3'
miRNA:   3'- cCAUGGgU---------GGGCGacGGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 83422 0.67 0.753244
Target:  5'- aGGUugCCGCCgggggGCUccCCGGGCAGCGu -3'
miRNA:   3'- -CCAugGGUGGg----CGAc-GGUUCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 106379 0.67 0.753244
Target:  5'- --cGCCCgccgcggcGCCCGCUGCgCGAcgGGCAGg -3'
miRNA:   3'- ccaUGGG--------UGGGCGACG-GUUcgUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 800 0.67 0.753244
Target:  5'- --cAUCguCCCGCcgGCCAaucgguGGCAGCGGg -3'
miRNA:   3'- ccaUGGguGGGCGa-CGGU------UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 87432 0.67 0.753244
Target:  5'- cGGUGgCCguGCCCGCcGCCGccGCGGCc- -3'
miRNA:   3'- -CCAUgGG--UGGGCGaCGGUu-CGUCGuc -5'
29491 3' -58.2 NC_006151.1 + 65026 0.67 0.743621
Target:  5'- --gGCCCACCuCGUacggcaggggGCCcGGCGGCGGc -3'
miRNA:   3'- ccaUGGGUGG-GCGa---------CGGuUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 19443 0.67 0.743621
Target:  5'- uGGgcgGCUCGCgCUGgaGCCGcggcaccucgGGCGGCAGg -3'
miRNA:   3'- -CCa--UGGGUG-GGCgaCGGU----------UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 114123 0.67 0.743621
Target:  5'- -cUGCCCcacguGCgCCGCcGCCGAGCcGCGGc -3'
miRNA:   3'- ccAUGGG-----UG-GGCGaCGGUUCGuCGUC- -5'
29491 3' -58.2 NC_006151.1 + 44554 0.67 0.740715
Target:  5'- uGGUGgUCGaugauCUCGCUGCCGaggagcuccgcugcAGCGGCGGa -3'
miRNA:   3'- -CCAUgGGU-----GGGCGACGGU--------------UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 69961 0.67 0.737801
Target:  5'- --aGCCC-CCCGggGCCGcgcgggcgcugcagcGGCGGCAGc -3'
miRNA:   3'- ccaUGGGuGGGCgaCGGU---------------UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 48911 0.67 0.733902
Target:  5'- aGUACCgCGgCCGCUGCCugaccgagGAGguGCu- -3'
miRNA:   3'- cCAUGG-GUgGGCGACGG--------UUCguCGuc -5'
29491 3' -58.2 NC_006151.1 + 78272 0.67 0.733902
Target:  5'- --gGCCCGCUgGCaccUGCCGAGCuGCu- -3'
miRNA:   3'- ccaUGGGUGGgCG---ACGGUUCGuCGuc -5'
29491 3' -58.2 NC_006151.1 + 109301 0.67 0.733902
Target:  5'- --gAgCgGCCCGCcGCCucGGCGGCAGc -3'
miRNA:   3'- ccaUgGgUGGGCGaCGGu-UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 121686 0.67 0.733902
Target:  5'- cGG-GCCgACCCgGCcaugGCgGAGCGGCGGc -3'
miRNA:   3'- -CCaUGGgUGGG-CGa---CGgUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 139355 0.67 0.733902
Target:  5'- uGUACCUcuGCCUGCUGgUAGGgGGCGu -3'
miRNA:   3'- cCAUGGG--UGGGCGACgGUUCgUCGUc -5'
29491 3' -58.2 NC_006151.1 + 102373 0.67 0.733902
Target:  5'- cGU-CCgCGCCCGUgGCCAAGCuGGCGc -3'
miRNA:   3'- cCAuGG-GUGGGCGaCGGUUCG-UCGUc -5'
29491 3' -58.2 NC_006151.1 + 116997 0.67 0.730969
Target:  5'- uGGUGCCgCAgcaccacgcgcuccCCCGCggGcCCGGGCcGCAGg -3'
miRNA:   3'- -CCAUGG-GU--------------GGGCGa-C-GGUUCGuCGUC- -5'
29491 3' -58.2 NC_006151.1 + 118322 0.67 0.729989
Target:  5'- cGUGCCCccgagcagcgccgcGCCCGCccucucgcgcgccUGCgAGGCGGCGc -3'
miRNA:   3'- cCAUGGG--------------UGGGCG-------------ACGgUUCGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.