miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29491 3' -58.2 NC_006151.1 + 86327 0.66 0.78144
Target:  5'- cGUGCUCGCCCGC-GCCGugGGCc-CGGa -3'
miRNA:   3'- cCAUGGGUGGGCGaCGGU--UCGucGUC- -5'
29491 3' -58.2 NC_006151.1 + 90706 0.66 0.78144
Target:  5'- cGG-ACgCGCCCGCccCgCAGGCGGCGGc -3'
miRNA:   3'- -CCaUGgGUGGGCGacG-GUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 103456 0.66 0.78144
Target:  5'- --gGCCaCGCCCG-UGCCGGGCAcGguGc -3'
miRNA:   3'- ccaUGG-GUGGGCgACGGUUCGU-CguC- -5'
29491 3' -58.2 NC_006151.1 + 107510 0.66 0.78144
Target:  5'- cGGUcgACCCGCCCacGCUcccGCCGuuGGCcccGGCGGc -3'
miRNA:   3'- -CCA--UGGGUGGG--CGA---CGGU--UCG---UCGUC- -5'
29491 3' -58.2 NC_006151.1 + 137720 0.66 0.78144
Target:  5'- --cGCCCugCCGUcGCCGuacGCGGUGGc -3'
miRNA:   3'- ccaUGGGugGGCGaCGGUu--CGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 39627 0.66 0.78144
Target:  5'- cGGUGagCACCCGC-GCCGGGCccCGGa -3'
miRNA:   3'- -CCAUggGUGGGCGaCGGUUCGucGUC- -5'
29491 3' -58.2 NC_006151.1 + 50607 0.66 0.78144
Target:  5'- cGGgcCCCGCgCCGCcGC--GGCAGCGu -3'
miRNA:   3'- -CCauGGGUG-GGCGaCGguUCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 69537 0.66 0.780518
Target:  5'- gGGcGCCCugcaucaGCCCGCUcGCCAcguGGCuGCGc -3'
miRNA:   3'- -CCaUGGG-------UGGGCGA-CGGU---UCGuCGUc -5'
29491 3' -58.2 NC_006151.1 + 9181 0.66 0.780518
Target:  5'- --cGCCCGCCCucGCccccuccgucucaUGCCAcccGCGGCAGc -3'
miRNA:   3'- ccaUGGGUGGG--CG-------------ACGGUu--CGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 49145 0.66 0.772162
Target:  5'- --cGCCCGCCCacgGCUGCCuggaggccuGGGCGcgccGCGGg -3'
miRNA:   3'- ccaUGGGUGGG---CGACGG---------UUCGU----CGUC- -5'
29491 3' -58.2 NC_006151.1 + 50452 0.66 0.772162
Target:  5'- uGGgcaCCGCCCGCgggcgcucgcGCCAGcGCGGCGc -3'
miRNA:   3'- -CCaugGGUGGGCGa---------CGGUU-CGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 131414 0.66 0.772162
Target:  5'- cGGgcUCCuccuCCuCGCUGCUcuccucgucGGGCGGCGGg -3'
miRNA:   3'- -CCauGGGu---GG-GCGACGG---------UUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 85290 0.66 0.772162
Target:  5'- -cUACCCGCgCGUgccGCgCGAGCAGCu- -3'
miRNA:   3'- ccAUGGGUGgGCGa--CG-GUUCGUCGuc -5'
29491 3' -58.2 NC_006151.1 + 69209 0.66 0.772162
Target:  5'- cGGgGCCCGCgCCgGCcGCCccAGGCGGUGGa -3'
miRNA:   3'- -CCaUGGGUG-GG-CGaCGG--UUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 101717 0.66 0.771227
Target:  5'- cGGUGCCCuccgugcACCCGauggccCUGCCGccggacccGGCGGCc- -3'
miRNA:   3'- -CCAUGGG-------UGGGC------GACGGU--------UCGUCGuc -5'
29491 3' -58.2 NC_006151.1 + 81583 0.67 0.766535
Target:  5'- gGGU-CUCGCgCGCgucGCCGgggccgccggcgcgcAGCAGCAGg -3'
miRNA:   3'- -CCAuGGGUGgGCGa--CGGU---------------UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 72076 0.67 0.763706
Target:  5'- ----aCCACCCGCgccgucagcucgcggGCCugggcGAGCGGCAGc -3'
miRNA:   3'- ccaugGGUGGGCGa--------------CGG-----UUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 112080 0.67 0.762761
Target:  5'- uGGUggaGCUC-CCCGg-GUCGGGCGGCGGa -3'
miRNA:   3'- -CCA---UGGGuGGGCgaCGGUUCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 51214 0.67 0.762761
Target:  5'- --aGgCCGCCCGCgggcccGCgCAGGCGGCGc -3'
miRNA:   3'- ccaUgGGUGGGCGa-----CG-GUUCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 7095 0.67 0.762761
Target:  5'- -aUGCCCgGCCCGCUcugcgGCCAucuuGGCcGCGGc -3'
miRNA:   3'- ccAUGGG-UGGGCGA-----CGGU----UCGuCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.