miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 876 0.68 0.716007
Target:  5'- uUCCGcCCGCUC--UCCCACCGCCu-- -3'
miRNA:   3'- -AGGUaGGUGAGuaGGGGUGGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 1465 0.68 0.716007
Target:  5'- cCCAUCCACaagaccaccUCcaCCCCagagACCACCGCc -3'
miRNA:   3'- aGGUAGGUG---------AGuaGGGG----UGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 60663 0.68 0.716007
Target:  5'- -gCGUCCucGCUCccGUCgCCGCCGCCGUc -3'
miRNA:   3'- agGUAGG--UGAG--UAGgGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 64163 0.68 0.716007
Target:  5'- cUCC-UUCGCccCGUCCCCGCCcCCGUc -3'
miRNA:   3'- -AGGuAGGUGa-GUAGGGGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 45496 0.68 0.716007
Target:  5'- aUCCGcagcgCCGCUUucagCCCCAggagccgucgacCCACCGCGg -3'
miRNA:   3'- -AGGUa----GGUGAGua--GGGGU------------GGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 59431 0.68 0.706071
Target:  5'- gCCAgcUCgGCgUCggCCgCCGCCGCCGCGa -3'
miRNA:   3'- aGGU--AGgUG-AGuaGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 109654 0.68 0.706071
Target:  5'- gCCG-CCGCUg--CCgCCACCGCCGCc -3'
miRNA:   3'- aGGUaGGUGAguaGG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 51795 0.68 0.706071
Target:  5'- cCCGcUCCagGCUCAggCCCUGCgACCGCGc -3'
miRNA:   3'- aGGU-AGG--UGAGUa-GGGGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 65916 0.68 0.706071
Target:  5'- cUCGUCCuCgUCGggcgCCCCGCCGCCGg- -3'
miRNA:   3'- aGGUAGGuG-AGUa---GGGGUGGUGGCgu -5'
29492 3' -57.6 NC_006151.1 + 60236 0.68 0.705073
Target:  5'- gCCGUCCacguacacgaagaGCUCGUCgCgcagcaGCCGCCGCAc -3'
miRNA:   3'- aGGUAGG-------------UGAGUAGgGg-----UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 1185 0.68 0.696072
Target:  5'- aCCGUCCAC-C--UCCCACCACCa-- -3'
miRNA:   3'- aGGUAGGUGaGuaGGGGUGGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 1312 0.68 0.696072
Target:  5'- cCCAUCUGCUaagaCCCACCACCa-- -3'
miRNA:   3'- aGGUAGGUGAguagGGGUGGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 41427 0.68 0.696072
Target:  5'- uUCCGUCCccACUCccagccUCCCCcgcuGCCACCGa- -3'
miRNA:   3'- -AGGUAGG--UGAGu-----AGGGG----UGGUGGCgu -5'
29492 3' -57.6 NC_006151.1 + 141577 0.68 0.696072
Target:  5'- cUCCG-CCGCUCcUCCCCccgggcgagaGCCGCCcgGCGa -3'
miRNA:   3'- -AGGUaGGUGAGuAGGGG----------UGGUGG--CGU- -5'
29492 3' -57.6 NC_006151.1 + 82977 0.68 0.696072
Target:  5'- cUCCAUgCCGCgCGUCUgcgccgCCACgGCCGCGg -3'
miRNA:   3'- -AGGUA-GGUGaGUAGG------GGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 50502 0.68 0.694066
Target:  5'- cCCGUCUACgccaccgUCGUCCagccuacccaccaCCACCACCaGCAg -3'
miRNA:   3'- aGGUAGGUG-------AGUAGG-------------GGUGGUGG-CGU- -5'
29492 3' -57.6 NC_006151.1 + 26085 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26050 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26015 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25980 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.