miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 131187 0.67 0.773814
Target:  5'- cCCAUCC--UCGUCCCCAUCcUCGUc -3'
miRNA:   3'- aGGUAGGugAGUAGGGGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 99929 0.67 0.773814
Target:  5'- -aCGgcgCCGgcCUCAUCCCCaacgucagcgGCUACCGCAc -3'
miRNA:   3'- agGUa--GGU--GAGUAGGGG----------UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 42650 0.67 0.773814
Target:  5'- gUCUggCCGggCAUCCCCGCCGCgGgGa -3'
miRNA:   3'- -AGGuaGGUgaGUAGGGGUGGUGgCgU- -5'
29492 3' -57.6 NC_006151.1 + 42542 0.67 0.773814
Target:  5'- uUCUAgguuUCC-CUCuUCCCCGCCACCc-- -3'
miRNA:   3'- -AGGU----AGGuGAGuAGGGGUGGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 112213 0.67 0.771015
Target:  5'- cCCGUgggcgcagucgcgcUCGCUCGUCgCCGCCGCCagGCGc -3'
miRNA:   3'- aGGUA--------------GGUGAGUAGgGGUGGUGG--CGU- -5'
29492 3' -57.6 NC_006151.1 + 131348 0.67 0.764441
Target:  5'- gCCGgcccCCGCUCGUCCUCuccuCCuCCGCc -3'
miRNA:   3'- aGGUa---GGUGAGUAGGGGu---GGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 87426 0.67 0.764441
Target:  5'- cCCAgCCGgUggcCGUgCCCGCCGCCGCc -3'
miRNA:   3'- aGGUaGGUgA---GUAgGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 58728 0.67 0.762552
Target:  5'- cCCGUgCCGCUCGcgucgcgcagcgCCgCgGCCACCGCGg -3'
miRNA:   3'- aGGUA-GGUGAGUa-----------GG-GgUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 12012 0.67 0.754951
Target:  5'- cCCGUCguCUC--UCCCGCCGgCGCAa -3'
miRNA:   3'- aGGUAGguGAGuaGGGGUGGUgGCGU- -5'
29492 3' -57.6 NC_006151.1 + 107588 0.67 0.754951
Target:  5'- cUCCcgCCGC-CAagcuggCCCCGCCggcGCCGCc -3'
miRNA:   3'- -AGGuaGGUGaGUa-----GGGGUGG---UGGCGu -5'
29492 3' -57.6 NC_006151.1 + 76873 0.67 0.754951
Target:  5'- gCCG-CCGC-CAggagCCCCAgCGCCGCc -3'
miRNA:   3'- aGGUaGGUGaGUa---GGGGUgGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 57350 0.67 0.754951
Target:  5'- --aGUCCGCggggCCCUcgcGCCGCCGCAg -3'
miRNA:   3'- aggUAGGUGaguaGGGG---UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 117897 0.68 0.745353
Target:  5'- aCC-UCCGCcucucucuUCA-CCCCGCCGCCGg- -3'
miRNA:   3'- aGGuAGGUG--------AGUaGGGGUGGUGGCgu -5'
29492 3' -57.6 NC_006151.1 + 4840 0.68 0.745353
Target:  5'- cCCAgagCCcCUCgcgggaGUCCCCggcGCCGCCGUAg -3'
miRNA:   3'- aGGUa--GGuGAG------UAGGGG---UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 26482 0.68 0.735657
Target:  5'- cUCGUCCucCUCGUCCUCuCCAUCGUc -3'
miRNA:   3'- aGGUAGGu-GAGUAGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 84160 0.68 0.734683
Target:  5'- gCCAgcugcgCgACUCGgcgcgccUCCUCGCCGCCGCc -3'
miRNA:   3'- aGGUa-----GgUGAGU-------AGGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 117932 0.68 0.729796
Target:  5'- gUCCGcCCggagaggggaccgagACUCGaCCCCGuCCGCCGCGc -3'
miRNA:   3'- -AGGUaGG---------------UGAGUaGGGGU-GGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 101871 0.68 0.725872
Target:  5'- -gCA-CCGCUC--CCgCCGCCGCCGCGg -3'
miRNA:   3'- agGUaGGUGAGuaGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 64163 0.68 0.716007
Target:  5'- cUCC-UUCGCccCGUCCCCGCCcCCGUc -3'
miRNA:   3'- -AGGuAGGUGa-GUAGGGGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 60663 0.68 0.716007
Target:  5'- -gCGUCCucGCUCccGUCgCCGCCGCCGUc -3'
miRNA:   3'- agGUAGG--UGAG--UAGgGGUGGUGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.