miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 137637 0.66 0.818626
Target:  5'- cUCCG-CC-CUCGUCCgCGCCcCCGUc -3'
miRNA:   3'- -AGGUaGGuGAGUAGGgGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 114443 0.66 0.809967
Target:  5'- aCCGcCUGCUCGgggccugCgCCgGCCACCGCAu -3'
miRNA:   3'- aGGUaGGUGAGUa------G-GGgUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 90079 0.66 0.809967
Target:  5'- -aCGUUCACgagggcCCCCGCCgcGCCGCAg -3'
miRNA:   3'- agGUAGGUGagua--GGGGUGG--UGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 109488 0.66 0.809092
Target:  5'- cCCcgCgGCUCAUguucacaccuccgCCgCUGCCGCCGCAg -3'
miRNA:   3'- aGGuaGgUGAGUA-------------GG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 107787 0.67 0.802036
Target:  5'- aUCCAgccaUCGCUCAaggcgcgcaucgagcCCCCGCCGCCGg- -3'
miRNA:   3'- -AGGUa---GGUGAGUa--------------GGGGUGGUGGCgu -5'
29492 3' -57.6 NC_006151.1 + 71457 0.67 0.801147
Target:  5'- cUCC-UCCcucGCUCcgCCUCGCCACCcCGg -3'
miRNA:   3'- -AGGuAGG---UGAGuaGGGGUGGUGGcGU- -5'
29492 3' -57.6 NC_006151.1 + 14793 0.67 0.801147
Target:  5'- aCCccCCGCUCGaccgcccgCCCCcgacCCACCGCGu -3'
miRNA:   3'- aGGuaGGUGAGUa-------GGGGu---GGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 107926 0.67 0.801147
Target:  5'- cCCAaCC-C-CAgggucCCCCACCGCCGCc -3'
miRNA:   3'- aGGUaGGuGaGUa----GGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 43176 0.67 0.792177
Target:  5'- cCCAacCCAaucUUCGcCCCCACCGCCuGCAc -3'
miRNA:   3'- aGGUa-GGU---GAGUaGGGGUGGUGG-CGU- -5'
29492 3' -57.6 NC_006151.1 + 37451 0.67 0.792177
Target:  5'- -aCGUCCGC-CAggccgcggCCCGCUACCGCGc -3'
miRNA:   3'- agGUAGGUGaGUag------GGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 38510 0.67 0.792177
Target:  5'- cUCCGgcuacgCCAgCUC--CCCCGCCGCCGg- -3'
miRNA:   3'- -AGGUa-----GGU-GAGuaGGGGUGGUGGCgu -5'
29492 3' -57.6 NC_006151.1 + 78995 0.67 0.792177
Target:  5'- cCCGUCCACaaCA-CCCC-CCGCuCGCu -3'
miRNA:   3'- aGGUAGGUGa-GUaGGGGuGGUG-GCGu -5'
29492 3' -57.6 NC_006151.1 + 135879 0.67 0.792177
Target:  5'- -gCGUCCGCgugCggCCCguguucguCGCCGCCGCGa -3'
miRNA:   3'- agGUAGGUGa--GuaGGG--------GUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 30544 0.67 0.792177
Target:  5'- cUCCccCCuCUCGUUCCgCGCCGCaCGCGc -3'
miRNA:   3'- -AGGuaGGuGAGUAGGG-GUGGUG-GCGU- -5'
29492 3' -57.6 NC_006151.1 + 83761 0.67 0.788548
Target:  5'- gCCAUCgGCUCGggcacguacagcgCCCCGCCGagCGCc -3'
miRNA:   3'- aGGUAGgUGAGUa------------GGGGUGGUg-GCGu -5'
29492 3' -57.6 NC_006151.1 + 38999 0.67 0.783063
Target:  5'- gCCGcgcgCCGCggcgccCcgCUCCGCCGCCGCGc -3'
miRNA:   3'- aGGUa---GGUGa-----GuaGGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 37206 0.67 0.783063
Target:  5'- cUCC-UCCGcCUCcUCCuCCGCCGCgGCc -3'
miRNA:   3'- -AGGuAGGU-GAGuAGG-GGUGGUGgCGu -5'
29492 3' -57.6 NC_006151.1 + 42942 0.67 0.783063
Target:  5'- cUCCccCCAC--AUCCUCGCCAuCCGCGg -3'
miRNA:   3'- -AGGuaGGUGagUAGGGGUGGU-GGCGU- -5'
29492 3' -57.6 NC_006151.1 + 93203 0.67 0.783063
Target:  5'- cUCCGUCCcCcCGUCCaCC-UCACCGCc -3'
miRNA:   3'- -AGGUAGGuGaGUAGG-GGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 93695 0.67 0.782144
Target:  5'- cCCGcagaaacUCgCACUCgAUCUCCACCGCCucgGCAa -3'
miRNA:   3'- aGGU-------AG-GUGAG-UAGGGGUGGUGG---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.